Functional gene expression is a basic life process that connects the coding information of a gene to protein products. The level of gene expression is considered as a quantitative trait between genotype and phenotype and plays an important role in response to climatic and environmental changes. First, we systematically summarize regulatory elements of gene expression in plant species and empirical evidence, including the effects of transcription factors and small RNAs on gene expression regulation. Second, this review discusses the eQTL mapping for regulatory elements of gene expression through gene expression-based genome-wide association study (GWAS) and the limitations of this method. This review analyzes the intraspecific variation in gene expression in theory under the processes of mutation, drift and selection and the testing methods. This review also analyzes the interspecific evolution of gene expression under the mutation and drift processes or under the phylogeny-based drift-selection processes and the testing methods. Finally, this review discusses the regulation of gene expression by the plant mating system. Selfing reduces the effective population size, mutation rate, recombination rate and competition from exogenous pollen, and changes the efficacy of natural selection in the gametophytic and sporophytic phases. Selfing regulates intraspecific gene expression variation and interspecific gene expression evolution. This review comprehensively comments on theoretical and practical research progress and existing questions, which aids in our deep understanding of plant gene expression regulation and evolution mechanisms.

The external environment severely affects growth and development of plants. In recent years, the increasing extreme climates have posed a serious threat to the growth and development of plants. Understanding the regulatory mechanisms of plant stress tolerance is of great significance for ensuring the survival and development of plants (especially economic crops) and their yields. Alternative splicing is an important post-transcriptional regulatory mechanism and plays an important role in the diversity of plant gene functions and stress resistance. At present, a variety of alternative splicing variants of stress-resistant related genes have been identified in different plant species, and several regulatory mechanisms involved in alternative splicing have been elucidated, effectively advancing the relevant theoretical basis for plant stress resistance in plants. This paper reviews the types and splicing mechanisms of alternative splicing in plants, highlights the recent progress in alternative splicing regulation of plant responses to abiotic stress, and provides a prospect for the future direction of research on alternative splicing in plants.

INTRODUCTION Chrysanthemum × morifolium is one of the ten most famous traditional flowers in China, and it has a rich variety of cultivars with diverse floral colour and shapes. However, varieties with blue floral colour have not been found in the natural chrysanthemum, therefore, breeding blue chrysanthemums has always been a goal pursued by researchers.

RATIONALE The total flavonoid extract of C. × morifolium ‘Wandai Fengguang’ could turn blue when adding appropriate concentration of Fe³⁺, and its living petal cells could also turn blue with the participation of Fe³⁺, which proved the feasibility of breeding blue chrysanthemums with Fe³⁺. Meanwhile, C. × morifolium ‘Wandai Fengguang’ can bloom both in summer and autumn, with early flowering and long flowering period, which is also an important material for the study of flowering period. Therefore, in order to cultivate blue chrysanthemums and achieve the targeted improvement of flowering period, it is particularly important to establish an efficient and stable regeneration and genetic transformation system for the C. × morifolium ‘Wandai Fengguang’. However, chrysanthemum has a long history of cultivation and complex genetic background, so the regeneration and genetic transformation system is not universal among different varieties.

RESULTS In this study, C. × morifolium ‘Wandai Fengguang’ was used as the experimental material to study the effects of different explant types with different combinations of plant growth regulators on its regeneration, and to investigate the effects of relevant factors on the efficiency of genetic transformation with the Agrobacterium-mediated genetic transformation method. The experimental results showed that the most suitable explants for the regeneration of C. × morifolium ‘Wandai Fengguang’ was the transverse thin cell layers (tTCLs), and the optimal culture medium was MS+1.5 mg∙L^-1 6-BA+0.6 mg∙L^-1 NAA. The highest differentiation rate was 70.06% and an adventitious bud coefficient was 3.37. The kanamycin selection pressures for the differentiation of the tTCLs and the adventitious bud rooting were 7.5 mg∙L^-1 and 5.0 mg∙L^-1, respectively. The optimal procedure for genetic transformation was pre-culture for 1 day, OD₆₀₀=0.8, treatment for 5 minutes, and co-culture in the dark for 3 days. Fifteen resistant plantlets were screened on kanamycin medium, and two positive plantlets were confirmed by PCR amplification, with a transformation efficiency of 13.33%.

CONCLUSION This study laid the foundation for the gene function analysis and targeted improvement molecular breeding of chrysanthemum by using this kind of unique variety resource, and provided reference for the establishment of regeneration and transformation system for other chrysanthemum varieties.

SWEETs are a recently discovered family of bidirectional sugar transporters that are widely present in all organisms. Their high substrate specificity for hexoses (such as glucose, fructose and galactose) and sucrose in different clades underlines their significance in regulating sugar signaling during various developmental and physiological processes in plants. This review primarily focuses on how SWEETs precisely respond to various biotic and abiotic stresses. We summarized systematically the regulatory mechanisms of SWEETs in response to environmental stresses at both the transcriptional level and the post-translational level and in multiple signal transduction pathways. This review aims to provide a novel perspective and deeper understanding of the complex biological functions and regulating mechanisms of SWEET transporters, and provides valuable information for future research on plant stress resistance and molecular breeding crops with high yield and disease resistance.

Salicylic acid (SA) is a natural phenolic compound in plants that plays a crucial regulatory role in plant immune responses. Plants primarily synthesize SA through two pathways: the isochorismate synthase (ICS) pathway and the phenylalanine ammonia-lyase (PAL) pathway. The synthesized SA is perceived by receptors such as nonexpressor of pathogenesis-related genes 1 (NPR1), which subsequently activate immune responses. In Brassicaceae species like Arabidopsis thaliana, SA is mainly synthesized via the ICS pathway, whereas monocots and non-Brassicaceae dicots predominantly rely on the PAL pathway. For a long time, understanding of SA biosynthesis via the PAL pathway has been incomplete, hindering research on SA-mediated immunity in crops and significantly limiting progress in crop disease-resistant breeding. Recently, three research groups from China independently elucidated the PAL-mediated SA biosynthesis pathway in crops. Building on these breakthroughs, this review summarizes recent advances in the study of SA-mediated plant immune responses. We primarily focus on the biosynthetic pathways of SA within plants, the mechanisms by which SA is perceived and activates immune responses, and discuss current challenges and future directions in SA-mediated immunity research. We hope this review provides new insights and perspectives for both theoretical studies and practical applications in crop disease-resistant breeding.

INTRODUCTION: To establish an efficient Agrobacterium-mediated genetic transformation system for peanuts and lay a foundation for the study of peanut gene functions and variety breeding.

RATIONALE: In this study, 11 peanut varieties were selected, and the cotyledonary leaflets from the variety with the highest bud cluster induction rate were screened out as experimental materials. By screening and optimizing influencing factors such as Agrobacterium strains, the optical density (OD) value of the bacterial suspension, the concentration of acetosyringone (AS), the concentration of surfactants, the infection method and duration, and the co-culture time, transgenic plants of peanut cotyledonary leaflets were obtained.

RESULTS: The results showed that using the embryo leaflet of Huayu 9133 as the receptor, the recombinant Agrobacterium containing eGFP (green fluorescent protein) and GUS (β-glucosidase) protein was used to infect and transform. It was found that when the infection solution was MS liquid+LBA4404 strain+100 μmol∙L^-1 AS+150 mg∙L^-1 surfactant Silwet-77 + bacterial solution OD600 was 0.7, the infection method was vacuuming for 15 min + soaking for 20 min + co-culture for 4 d, the peanut conversion rate was the highest. The positive rates of CaMV 35S:eGFP and AhUBQ4:GUS were 52.67% and 57.67%, respectively.The transgenic plants were induced by tissue culture method. The transgenic plants containing eGFP protein were identified as transgenic positive plants by eGFP green fluorescence and PCR detection, and the transgenic plants containing GUS protein were identified as transgenic positive plants by GUS staining and PCR detection.

CONCLUSION: This experiment successfully established and optimized the peanut genetic transformation system, which provided a reference for the study of peanut gene function, the cultivation of resistant varieties, quality improvement and biotechnology research.

CaMV 35S:eGFP侵染材料荧光示意图(a: 再生芽丛明场, b: 再生芽丛荧光, c: 再生苗明场, d: 再生苗荧光)

In recent years, significant progresses have been made in plant stress biology, particularly in elucidating the mechanisms underlying responses to extreme temperatures and salinity-alkalinity stresses. These advancements have not only broadened our understanding of plant resilience but also provided a wealth of potential targets for molecular breeding, paving new avenues for developing climate-resilient crop varieties that maintain high yield potential under both optimal and adverse conditions. This review concisely summarizes current knowledge on signal perception and transduction mechanisms during plant adaptation to extreme temperature and saline-alkali stresses, discusses the balance regulation between growth/development and stress tolerance, particularly highlights recent breakthroughs by Chinese scientists in discovering key genes and deciphering mechanisms that synergistically improve crop stress resistance and yield. We also provide future prospects for breeding strategies.

Iron-sulfur [Fe-S] clusters, which act as cofactors for iron-sulfur proteins, are ubiquitously implicated in a diverse array of biological processes, such as photosynthesis, respiration, electron transport, and the biosynthesis of essential vitamins and cofactors. Their intracellular biogenesis is modulated by a suite of proteins that catalyze and regulate the process, with compartmentalization occurring within discrete subcellular compartments. Mitochondria, as the central organelles for cellular energy metabolism, harbor numerous key metabolic enzymes that are iron-sulfur proteins, necessitating the provision of iron-sulfur clusters by the mitochondrial assembly machinery, the iron-sulfur cluster (ISC). Advancements in research, particularly from bacteria and yeast systems, have facilitated significant strides in the identification and functional characterization of pivotal catalytic and regulatory proteins within the plant mitochondrial ISC system. Additionally, considerable progress has been made in the research of the role in iron-sulfur clusters in the plant growth and development. The elucidation of plant-specific components within the iron-sulfur cluster synthesis machinery and the mechanisms by which this system responds to environmental stress are areas of growing interest. This manuscript provides a comprehensive review of the current state of research on the mechanism of iron-sulfur cluster synthesis in plants, with a particular focus on the mitochondrial ISC assembly system. It also provides a succinct synopsis of the role of key genes within the ISC system in plant growth and development, as well as their involvement in the response to abiotic stressors.

With the sharp change of the global climate, the ecological environment for plant is becoming increasingly harsh, therefore the molecular mechanisms underlying how circadian synergistically interacts with light or temperature receptors to transmit environmental signals and rhythmically regulate various growth and development process received widespread attention. As an endogenous timer of plants, the core oscillator of circadian clock is composed of multiple coupled transcriptional-translational feedback loops (TTFL), and it is modified from transcription, post-transcription, translation, post-translation to epigenetic levels. These multi-precise regulatory mechanisms ensure that the circadian clock can be synchronized and reset by external signals, so that the endogenous rhythm matches with external cycles, thereby endowing plants with the ability to optimize resource utilization and tend towards the optimal growth, which also has an important significance for guiding the genetic improvement and domestication of crops. In this review, we summarized the multi-level of regulatory mechanisms of core oscillator as well as the molecular function of circadian homologous genes in crops, thoroughly described the interaction network between the circadian clock and the light and temperature signal pathways and give prospects for molecular breeding based on the opinion, which provides new ideas for expanding the environmental adaptability and optimizing agronomic traits of crops.

INTRODUCTION:Plant growth regulators are natural or artificially synthesized chemical substances that play an important regulatory role in the growth and development of crops, and can enhance the resistance of plants to stress.

RATIONALE To study the effects of different plant growth regulators on the growth and development of wheat under salt-alkali stress, and to explore methods to increase crop yield in saline-alkali land, we conducted spraying experiments on wheat in saline-alkali soil in the Yellow River Delta Agricultural High-tech Industry Demonstration Zone from 2023 to 2024. The experiment was divided into four groups: a distilled water control group, a 0.5% alginate aligosaccharide group, a Plant Gold group, and a mixed group of 0.5% alginate aligosaccharide and Plant Gold. The wheat was sprayed on March 28, April 12, April 28, and May 12, 2024.

RESULTS: The results showed that after spraying alginate oligosaccharide and its mixture with Plant Gold, the number of grains per ear and the 100-grain weight of wheat significantly increased. In particular, the group that received the mixture of alginate oligosaccharide and Plant Gold achieved a theoretical yield of 1 174.5 kg·hm^-2 for wheat in saline-alkali soil, which was an increase of 14.4% and 46.9% compared to the groups treated with only alginate oligosaccharide and Plant Gold, respectively.

CONCLUSION: Therefore, the combined application of alginate oligosaccharide and Plant Gold can significantly enhance the adaptability of wheat in saline-alkali land, demonstrating its important application potential in wheat production in such environments.

After selecting 1 m × 1 m sample plots within the experimental block and conducting spray tests with different plant growth regulators, the theoretical yields of different groups showed different changes. Among them, the yield of the mixed spray group was significantly higher than that of the control group.

INTRODUCTION: The AT-hook motif nuclear localized (AHL) gene family is a highly conserved transcription factors involved in plant growth, development, and stress responses, but their roles in spinach are still unknown.

RATIONALE:To reveal the basic characteristics of the AHL family in spinach, members of the spinach SoAHLfamily were identified at the whole-genome level, and their physicochemical properties, gene structure, conserved motifs, promoter elements, and salicylic acid-responsive expression profiles were analyzed in this study.

RESULTS: The results revealed 19 SoAHL family members in the spinach genome, which were unevenly distributed across six chromosomes. These SoAHL members can be classified into three branches, with 10 members in subfamily I and 9 members in subfamily II. The sequence composition of PPC and AT-hook conserved motifs varies among subfamilies; most of the SoAHL genes are located in the nucleus, cytoplasm, and mitochondrion. Members of subfamily I of SoAHL have no introns, whereas members of subfamily II contain 4-5 introns. The varying numbers of cis-acting elements relate to phytohormones and abiotic stress responses were distributed upstream of the promoters of the SoAHL members. The SoAHL genes can be expressed in roots, leaves, and petioles, with most genes expressed at relatively high levels in roots. The expression of two SoAHL genes (SOV6g041850.1 and SOV2g038950.1) was significantly induced by salicylic acid treatment. The expression profiles and salicylic acid-induced expression levels of SOV2g031340.1 and SOV4g018880.1 were highly correlated with the folic acid content, which may play a role in the spinach response to the salicylic acid signaling pathway. The transient overexpression of SOV4g018880.1 increased the folate content of spinach leaves by 1.75 times.

CONCLUSION: The results from the sequence characteristics, expression profiles and exogenous salicylic acid treatment revealed that the SoAHLs had potential functional diversity and that specific members may have positive effects on spinach folate accumulation. Our results will lay the foundation for further resolving the function of spinach AT-hook genes.

Phenotype (A), total folate content (B) and expression analysis of SoAHL (C) under 50 μmol∙L^-1 salicylic acid (SA) treatment for 5 days (D5) and 7 days (D7). CK: Control

INTRODUCTION Mahonia (Berberidaceae), a basal eudicot lineage, ranks as the second largest genus in the family, comprising approximately 100 species distributed across subtropical to temperate regions of East Asia and North America. The genus exhibits a classic East Asia-Western North America (EA/WNA) disjunction. Notably, Mahonia preserves abundant leaf fossil records in Cenozoic strata of the Northern Hemisphere, reflecting its prolonged evolutionary history. Characterized by distinctive foliar architecture that differs markedly from other angiosperm groups, this genus holds significant potential as a invaluable biological proxy or model plant for investigating the formation of intercontinental disjunct distribution patterns. Its unique morphological traits and biogeographic history provide critical opportunities to trace genus-level morphological evolution and spatio-temporal dynamics against the backdrop of global tectonic movements and climatic shifts.

RATIONALE Through comprehensive morphological surveys of extant Mahonia species, we established a novel leaf architecture classification framework designed for application to fossil leaf typology. This system aims to elucidate the genus’ foliar evolutionary trajectory since the Cenozoic and unravel the historical processes underlying its intercontinental disjunct distribution.

RESULTS Traditionally taxonomist divides Mahonia into two groups based on venation patterns: the palmately veined Group Orientales and the pinnately veined Group Occidentales. Building upon previous studies, we analyzed leaf architecture across 46 extant species and developed a refined subclade classification system using four diagnostic traits: leaflet margin type, serration density (teeth per edge), serration height, and leaflet length-to-width ratio. The Group Oriental was subdivided into seven foliar types (Microphylla, Japonica, Cardiophylla, Bodinieri, Polyodonta, Fortunei, and Nervosa), while the Occidental clade yielded six types (Chochoco, Dictyota, Volcania, Pumila, Lanceolata, and Aquifolium), accompanied by a diagnostic key. Distributional analyses revealed that within Group Orientales, geographic range expands with increasing serration height, whereas in Group Occidentales, distribution range correlates positively with serration density. The framework’s utility was further validated through taxonomic reclassification of two disputed fossil specimens, demonstrating its applicability to paleobotanical studies.

CONCLUSION Our refined foliar classification system for Mahonia represents a significant advancement in precision and granularity over previous systems. This framework holds substantial promise for standardizing Cenozoic leaf fossil typology across the Northern Hemisphere, while providing critical insights into the genus’ foliar evolution and the historical assembly of its intercontinental disjunct distribution pattern.

Retrieval and line drawings of leaf architecture of Mahonia

Rice (Oryza sativa) is one of the most vital food crops globally, and its yield plays a crucial role in ensuring food security. However, various diseases affecting rice pose significant threats to this security. Among these, rice blast, bacterial blight, and sheath blight are the three predominant diseases impacting global rice production. Consequently, there is an urgent need to breed and cultivate rice varieties with broad-spectrum disease resistance. In recent years, substantial advancements have been made in understanding the regulatory mechanisms underlying disease resistance in rice. This paper reviews these mechanisms from multiple perspectives, including the plant’s intrinsic immune responses and the functional dynamics of resistance genes. Furthermore, it highlights pressing issues that require immediate attention to facilitate broad-spectrum disease-resistant breeding efforts for rice.

INTRODUCTION:An efficient Agrobacterium rhizogenes-mediated transformation system for Pueraria lobata was established.

RATIONALE: In this study, tissue-cultured plantlets of P. lobata were used as explants to investigate the effects of different genotypes, A. rhizogenes strains, explants, precultivation times, infection times, culture days, subculture times, and culture methods on the efficiency of hairy root genetic transformation in P. lobata.

RESULTS: The results indicated that the induction rate of hairy root formation was the highest when the immature leaves of YG-19 were used as the explant material, reaching 10.2%. A. rhizogenes K599 was identified as the most suitable strain. The optimal explant material was immature leaves that had just unfolded from the first to second nodes of the 5^th to 13^th generation tissue culture plantlets subcultured for 8 days. After 3 days of pre-culture and 15 minutes of bacterial infection, the highest induction rate of hairy roots reached 22.4%. The optimal type of culture medium for the proliferation of hairy roots in P. lobatawas solid medium culture, and the fresh weight of hairy roots grown on solid medium was 75 times greater than that of hairy roots grown in liquid medium. PCR detection and fluorescence microscopy assays revealed that the expression of GFP and rolB genes in the hairy roots of P. lobata was stable, and the rate of cotransformation was 80%.

CONCLUSION: Genotype, A. rhizogenes strain, and culture duration were the most critical factors for the efficient genetic transformation of hairy roots in P. lobata.

The organs abscission is a phenomenon in which parts of organs are separated from the body. It is an adaptive strategy evolved by plants in the process of growth and response to environmental changes, which ensures the normal growth and adaptation of plants to the environment. This process involves the abscission zone formation, signal activation, cell separation, and is regulated by both internal (in vivo) physiological processes and external environmental factors including light, temperature, and humidity. In agricultural production, the abscission of plant organs directly affects crop yield. Understanding the regulatory mechanisms of plant organ abscission is greatly important for improving crop yield. In recent years, tremendous progress has been made in the study of organ abscission mechanisms. The studies showed that the mechanisms of organ abscission in plants are largely conservative between species, but also with significant variations. This review delved into the physiological and biochemical mechanisms of plant organ abscission, and summarized the effects of both the environmental factors and the hormones and enzymes in the process. The review provides a solid theoretical support and practical guidance for crop genetic breeding and agricultural production improvement in connection with organ abscission.

In recent years, we have witnessed transformative breakthroughs in plant disease resistance research, particularly in deciphering the intricate interplay between hosts and pathogens. Cutting-edge discoveries span pathogen recognition mechanisms, immune signaling cascades, and multi-layered interactions integrating plants, pathogens, vectors, and environmental variables. Notably, pioneering studies from domestic research institutions have driven progress across pathogen-sensing systems, secondary metabolite-mediated defense, immune module engineering in crops, and artificial intelligence (AI)-powered solutions for pathogen-resistant peptide design. The rapid development of CRISPR/ Cas9-based gene editing and AI technologies has further empowered researchers to engineer disease-resistant crop varieties with unprecedented precision. Such progress holds profound implications for ensuring national food security and advancing strategic priorities in disease-resistant crop breeding, marking a transformative era in agricultural biotechnology and sustainable agriculture.

UV-B, as an inherent constituent of sunlight, exerts a crucial influence on the growth and development of plants. Recent studies showed that UV-B is not merely an environmental stressor, but also a functional signal molecule that is able to promote plant growth under moderate radiation level. The protein UVR8, as a unique photoreceptor specific to UV-B, plays an irreplaceable role in the plant's response to UV-B, whose functions are regulated by both upstream and downstream transcription factors. At present, a variety of transcription factors such as BBXs, WRKYs, MYBs, and PIFs have been reported to be involved in UV-B regulated processes like hypocotyl elongation, primary root length, leaf size and shape, flowering cycle, and anthocyanin synthesis. This article reviews the molecular mechanisms of UVR8 in the UV-B signaling pathway and summarizes the regulatory mechanisms of the transcription factors during the UV-B radiation process, to provide reference for relevant research.

INTRODUCTION: As the main grain crop, rice plays an important role in ensuring food security of China. Rise in global average temperature is detrimental to crop yield and heat stress is currently one of the major abiotic threats on rice production. There are significant variations in heat tolerance among different rice varieties. As a typical quantitative trait, heat tolerance of rice is controlled by multiple genes. Identification of new QTLs and genes related to heat tolerance is very important for the genetic research and the breeding of new heat-tolerant rice varieties.

RATIONALE:In recent years, many heat tolerant QTLs had been identified with different genetic populations and evaluation indicators at different growth stages. Most of those QTLs were mapped in large intervals due to the limited population sizes, simplified experimental designs and inaccurately controlled environments. The heat tolerance level identification in a population is very difficult for mature plants. Therefore, we developed a population of recombinant inbred lines (RILs) with 186 lines derived from japonica rice TD70 and indica rice Kasalath, which showed large variations in seedling survival rates under high temperature stress (HTSR). QTLs associated with HTSR were mapped by the high-density linkage Bin-map and candidate genes were identified.

RESULTS: Twenty-six QTLs related to the HTSR were mapped on 11 of the 12 chromosomes, with the exception of 3. The LOD values of single QTL ranged from 2.59-16.15, four of which with LOD values greater than 10. Seven QTLs were located within the same interval or adjacent to known heat tolerance QTLs. The major locus of qHTSR5.2 was located in the 26.25-26.38 Mb region of Chr. 5 with an LOD value of 12.07, which explained 7.18% of the total phenotypic variation in the HTSR. According to the annotation and sequence analysis of the genes located in the region of four major QTLs,we found that twenty-seven annotated genes with non-synonymous mutations in the coding regions between TD70 and Kasalath. Five of them were identified as potential candidate genes because the RILs sharing each of the distinct haplotypes of their parents for each gene exhibited significant different HTSR resistance level. Among them, three candidate genes encode heat shock proteins HSP20 or HSP17.5.

CONCLUSION: We detected 26 QTLs controlling seedling heat tolerance based on a high-density Bin map in a RIL population. Some of the QTLs were overlapped with known heat tolerance loci, indicating their strong effects on regulating heat tolerance of rice. Five candidate genes were identified through gene annotation, parental sequence comparison, effect analysis of heat tolerance between RILs with different haplotypes. The candidate genes identified in our study could be used for molecular mechanism research on high temperature tolerance of rice in the future.

Mapping of QTL for heat tolerance at seedling stage in rice based on a high-density Bin map. Heat tolerance of parents and RILs population during seedling stage. Location of QTLs contributing to heat tolerance at seedling stage.

Coumarins are a class of phenolic compounds with benzopyrones as the parent ring structure, categorized into simple and complex coumarins, and widely distributed in higher plants. In recent years, studies have shown that root-secreted coumarins can promote iron absorption in plants. Here, the recent progress in the discovery and identification of genes related to the biosynthesis and regulation of plant iron deficiency-induced coumarins is reviewed, and the molecular mechanisms of the biosynthesis, storage, secretion, and regulation of iron deficiency-induced coumarins are further elaborated. The mechanism by which coumarins could promote plant iron uptake has also been discussed. Finally, this paper provides a preliminary outlook on the future research directions to gain knowledge of these mechanisms, which could offer novel opportunities to generate iron deficiency-tolerant crops and iron-biofortified crops.

FLOWERING LOCUS T (FT) is a signaling protein synthesized in leaves and transported to the shoot apical meristem, where it functions as florigen, a key inducer of flowering and developmental transitions. Substantial progress has been made in elucidating the mechanisms underlying FT synthesis, transport, and the assembly and regulation of the florigen activation complex (FAC), providing a solid foundation for understanding plant developmental regulatory networks. Recently, a study integrated multiple regulatory layers, including protein-DNA interactions, liquid-liquid phase separation, and spatiotemporal expression patterns, thereby extending the traditional static FAC model into a dynamic and multilayered assembly framework. This work offers new molecular insights into how plants integrate environmental cues to regulate reproductive development. In this review, we summarize recent advances in FT and FAC research, highlight key outstanding questions, and discuss future directions, aiming to provide fresh perspectives for elucidating plant developmental regulation and for potential applications in crop improvement.

INTRUDUCTION: Xanthopappus subacaulis, endemic to the Qinghai-Xizang Plateau, is a perennial medicinal plant from the genus Xanthopappus of the family Asteraceae, with important economic, ecological and medicinal values. However, genomic information for this species remains limited, hindering further genetic studies and resource utilization. Determining an appropriate sequencing strategy for its whole genome is a key prerequisite for subsequent genomic studies.
RATIONALE: In order to determine the appropriate sequencing strategy for the whole genome of X. subacaulis, we analyzed and evaluated its genome size, heterozygosity, repeat and GC content using flow cytometry and genome survey analysis based on BGI sequencing.
RESULTS: Flow cytometry analyses using Opisthopappus longilobus and Solanum lycopersicum as reference genomes indicated that X. subacaulis was a diploid, with an estimated genome size of 1.94 G and 1.75 G respectively, and a DNA-C value of 0.99 pg. We generated approximately 100.3 G of clean short read sequencing data, with a GC content of 38.5%. K-mer analysis indicated that the genome size of X. subacaulis was 2 198.50 Mb, with a heterozygosity rate of 0.69%, and repeat content of 80.15%. The analysis of the long terminal repeat retrotransposons (LTR-RTs) indicated that the LTR/Copia was the most abundant LTR family, accounting for 30.72% of the whole genome, while the Gypsy family and the unknown LTRs accounted for 33.66% and 16.54%, respectively. Moreover, their peak insertion time began approximately three million years ago (Mya), with a marked amplification occurring within the last 1 Mya. These results suggested that the large-scale insertion of LTR elements was (most) likely one of the important factors leading to the genomic complexity of X. subacaulis.
CONCLUSION: This study clarifies the key genomic characteristics of X. subacaulis, which provides valuable reference data resources for subsequent genetic map construction and functional gene mining of X. subacaulis, and also lays a foundation for determining its whole-genome sequencing strategy.

Growth morphology and genomic characteristics of Xanthopappus subacaulis. (A) Growth morphology of X. subacaulis (bar=5 cm); (B) Depth and frequency distribution of K-mer and insertion time analysis of long terminal repeat retrotransposons (LTR-RTs)

Unraveling the mechanisms of plant disease resistance and immunity is crucial for breeding disease-resistant crops and safeguarding national food security. Photoreceptors, which are central for perceiving environmental signals, not only fine-tune plant growth and development, but also serve as key signaling hubs in plant-pathogen interactions. Studies have demonstrated that photoreceptor interact directly or indirectly with the COP1/SPA complex, HY5, PIFs, and other light-signaling components. By regulating the spatiotemporal expression of resistance-related defense genes and controlling the synthesis and response networks of defense-related hormones, photoreceptors precisely integrate light signals with pattern-triggered immunity (PTI) and effector-triggered immunity (ETI), thereby balancing plant growth and immunity. In recent years, research into the interaction between light signaling and plant immune systems has become a hot topic in the field of plant biology. Elucidating these underlying mechanisms offers new directions for breeding disease-resistant crops. This paper focuses on the molecular mechanisms of plant disease resistance regulated by photoreceptors, particularly the immune activation mechanisms mediated by photoreceptors and their spatiotemporal integration with immune-related hormone signals. Additionally, it delves into the potential application of optogenetic technology in studying this interaction. The aim is to provide new theoretical and technical avenues for future molecular breeding of disease-resistant crops, which will be based on photoreceptor modification and signal transduction pathways.

Rice bacterial leaf streak (BLS), caused by Xanthomonas oryzae pv. oryzicola (Xoc), is a significant quarantine disease. The pathogen exhibits both high genetic diversity and strong transmission capabilities. Driven by agricultural intensification and global warming, BLS has been progressively expanding across major indica rice-producing regions in southern China. This review systematically summarizes recent advances in Xoc-rice interaction mechanisms: (1) Pathogen perspective: elucidating pathogenic mechanisms of virulence factors (including T2SS, T3SS, and extracellular polysaccharides (EPS)) and pathovar differentiation patterns; (2) Host perspective: clarifying advances in PTI/ETI-mediated immunity signaling pathways, resistance (R) gene cloning, and susceptibility (S) gene editing; and (3) Future directions: proposing multi-omics approaches to decode Xoc pathogenicity networks, leveraging pan-genomics for large-scale mining of durable and broad-spectrum R genes, and constructing synergistic systems integrating S gene editing with immune activation to establish systematic solutions for sustainable BLS management.

3D reconstruction technology involves using computer graphics and image processing technologies to extract the geometric and topological information of the target object from the two-dimensional image data. This information is then used to create a three-dimensional mathematical model that can be processed by a computer, enabling the virtual reconstruction of the target object. In plant science research, the construction of three-dimensional models has become an effective way to study plant growth and development, morphological structure and functional mechanism. These models provide robust support for multi-scale imaging, measurement and analysis, demonstrating significant application potential in the field of agriculture and forestry. In recent years, advancements in plant 3D reconstruction technology have led to diverse applications in botanical research, covering plant morphological structure modeling, growth and development dynamic monitoring, and plant breeding. In this paper, we summarize the development process of 3D reconstruction technology and its application in plant studies across different scales (from organs and tissues to cells). We focus on the basic principles and applications of these technologies, aiming to provide theoretical and technical support for multimodal cross-scale imaging and plant phenotypic and functional research. Additionally, this work offers a novel approach to understand the principles of plant growth and development and the mechanisms underlying their responses to environmental changes.

INTRODUCTION: Galactinol synthase (GolS) is a key enzyme in the biosynthetic pathway of raffinose family oligosaccharides (RFOs), providing the activated galactosyl group for the biosynthesis and accumulation of RFOs in plants. It plays an important role in plant responses to abiotic stresses.

RATIONALE: Although the role of GolS in plant stress responses has been extensively studied, little is known about the molecular characteristics of the GolSgene family in Lagerstroemia indica. This study aims to identify the members of the LiGolS gene family, analyze their physicochemical properties, gene structure, and expression patterns, and explore their potential functions in salt stress response.

RESULTS: A total of 13 LiGolS gene family members were identified at the whole-genome level. These genes were unevenly distributed across 10 chromosomes. The isoelectric points of the 13 LiGolS proteins ranged from 4.75 to 9.45, with molecular weights varying from 37.69 to 46.12 kDa, and amino acid counts ranging from 327 to 404. Subcellular localization prediction revealed that six proteins were localized to chloroplasts, one to mitochondria, five to the cytoplasm, and one to vacuoles. Additionally, the number of exons in the 13 gene members ranged from 0 to 4. Expression analysis under salt stress showed that all LiGolS genes were upregulated to various degrees after salt treatment, suggesting their potential involvement in salt stress response in L. indica.

CONCLUSION: This study systematically identified and characterized the LiGolS gene family members in L. indica, including their physicochemical properties, gene structure, and expression patterns. These results lay the foundation for further functional analysis of LiGolS genes and provide theoretical insights into their roles in stress responses.

Expression patterns of LiGolS genes in Lagerstroemia indica under salt treatment

(A) Cloud and rain map of LiGolS gene expression in salt-sensitive L. indica cultivars under normal and salt treatment conditions; (B) Cloud and rain map of LiGolS gene expression in salt-tolerant L. indica cultivars under normal and salt treatment conditions; (C) LiGolS gene expression in different varieties of L. indica under normal and salt treatment conditions; (D) Heatmap of LiGolS gene expression patterns before and under salt treatment, this heatmap illustrated the log₂-transformed expression levels of LiGolS genes before and after salt treatment (yellow modules indicate higher expression levels, while green modules indicate lower expression levels). M-CK and N-CK indicate salt-sensitive and salt-tolerant cultivars under normal conditions, respectively; M-T and N-T indicate salt-sensitive and salt-tolerant groups under salt treatment conditions, respectively.

INTRODUCTION: Verticillium wilt (VW), caused by Verticillium dahliae, severely reduces cotton yield and fiber quality. Previous transcriptomic analysis in V. dahliae-inoculated Arabidopsis thaliana identified the pathogen-induced DIR1-like gene AT3G53980.2. In cotton, we discovered a homologous gene, GhDIR1 (Gh_A09G180700.1), encoding a lipid transfer protein. This study investigates its role in cotton resistance to V. dahliae.

RATIONALE: We characterized GhDIR1’s molecular features, expression patterns under pathogen stress, and functional impact using bioinformatics, subcellular localization, qRT-PCR, and virus-induced gene silencing (VIGS) analyses. Transcriptomic analysis of wild-type and GhDIR1-silenced plants were conducted to unravel downstream regulatory networks, focusing on metabolic pathways linked to plant immunity.

RESULTS: The results showed that GhDIR1 contains a 351 bp ORF encoding 116 amino acids. Subcellular localization confirmed its presence on the cell membrane. qRT-PCR showed rapid induction of GhDIR1 by V. dahliae. Silencing GhDIR1 increased cotton susceptibility to the pathogen. Transcriptomic data revealed that differentially expressed genes in silenced plants were enriched in flavonoid biosynthesis, sesquiterpene/triterpene biosynthesis, and α-linolenic acid metabolism. Key genes (GhCHS, GhDFR, GhCAD, GhSEQ, GhLOX, and GhAOC) in these pathways were downregulated, suggesting impaired synthesis of protective metabolites.

CONCLUSION: It is speculated that GhDIR1 positively regulates cotton resistance to VW by modulating flavonoid and terpenoid biosynthesis and jasmonic acid-related signaling. Its silencing disrupts critical defense pathways, highlighting its role in coordinating immune responses. These findings propose GhDIR1 as a potential target for enhancing disease resistance in cotton.

The induced expression pattern of GhDIR1 and related genes after inoculation with Verticillium dahliae.

INTRODUCTION: Genetic diversity is considered as a crucial aspect in assessment and conservation of rare and endangered species. Brachystachyum densiflorum is a species endemic to eastern China. In recent years, with rapid economic development, accelerated urbanization, and escalating pollutant emissions, the habitat of B. densiflorum has been continuously degraded, habitat fragmentation has intensified, and its populations have shown a tendency to decline.

RATIONALE: Genetic diversity endows species with abundant genetic resources and plays a pivotal role in shaping their capacity to adapt to new environments. To elucidate the genetic diversity of B. densiflorum and evaluate the influence of climate change on its genetic variation, reduced-representation genome sequencing technology was employed to obtain single nucleotide polymorphisms (SNPs), and subsequently population genetics and landscape genetics together with species distribution modelling were analyzed.

RESULTS: B. densiflorum had a moderate level of genetic diversity. Six populations were divided into two groups, and there was moderate differentiation (F_ST=0.102) and high gene flow (Nm=2.442) between them. Genotype-environment association analysis indicated that the two groups were diverged attributable to local adaptation to the climate. Temperature differences and low-temperature regimes interacting together with precipitation gave rise to genetic variation of this species. In total, 544 adaptive loci were identified, which displayed significant correlations with temperature difference, low-temperature factors (Bio2, Bio6, Bio11, and Bio7), and precipitation factors (Bio19). B. densiflorum migrated evidently northward from the Last Glacial Maximum to the current, with its distribution area increased by 89.5%. However, during the period from 2061 to 2080, the extent of the suitable area for this species will be contracted, and there will be partial degradation and fragmentation occurring in highly suitable areas within Anhui Province.

CONCLUSION: B. densiflorum showed a moderate level of genetic diversity and a moderate degree of genetic differentiation. Local adaptation drove the formation of the current genetic pattern of B. densiflorum, and temperature differences, low-temperature, and precipitation led to genetic variation. B. densiflorum has evidently migrated northward from the Last Glacial Maximum to the current with increase of distribution area. However, niche modelling indicated that during the period from 2061 to 2080, the suitable habitat area of B. densiflorum would be contracted, with partial degradation and fragmentation occurring in highly suitable areas within Anhui Province. These results provide the basis for conservation and utilization of B. densiflorum.

Population genetic structure analysis of Brachystachyum densiflorum

INTRODUCTION: Flower color is one of the important traits to evaluate the ornamental value of tree peony (Paeonia suffruticosa). Anthocyanin plays a major role in the color of tree peony petals. The biosynthesis of anthocyanin is mainly controlled by two types of genes which are directly involved in pigment metabolism and transcription factors which play a regulatory role. TCP transcription factors are involved in the regulation of secondary metabolism, flavonoid and chlorophyll synthesis in plants. Therefore, it is of great value for further analysis of anthocyanin biosynthesis and regulation mechanism to explore the gene function of TCP family in tree peony and clarify the regulation mechanism of TCP in tree peony petal coloration.

RATIONALE: In order to study the role of TCP transcription factor family in the process of tree peony petal coloration and provide candidate genes for tree peony flower color improvement and molecular breeding, the TCP family of tree peony was identified and analyzed by bioinformatics, and the function of genes TCP13 and TCP15a that may be involved in flower color regulation was analyzed.

RESULTS: Twenty-six TCP gene family members were identified from three tree peony genomes and divided into two subtribes and three subclasses, which were irregularly distributed on 5 chromosomes. The physicochemical properties and gene structure of different members were different, but all members contained TCP conserved domains. The transient expression of TCP13 and TCP15a, which may be involved in petal coloration, showed that TCP13 had no obvious effect on the purple phenotype induced by MYB57, while TCP15a could significantly inhibit it.Fluorescence quantitative PCR analysis showed that TCP15a could significantly inhibit the expression of anthocyanin synthase genes CHSa, DFR and ANS in the tissue of disseminated petals. The interaction between TCP15a and MBW protein complex members WD40-1 and WD40-2 was identified by protein interaction identification.

CONCLUSION: In this study, twenty-six TCP gene family members were screened and identified by mining the tree peony genome database, and the characteristics of TCP encoded amino acids, evolutionary relationship and gene structure were analyzed by bioinformatics.It was found that TCP15a may inhibit the biosynthesis of anthocyanins by competing with MYB57 and interacting with WD40, regulating the expression of enzyme genes CHSa, DFR and ANS, etc. The results provided a theoretical basis for exploring the molecular mechanism of tree peony petal coloration.

Identification of TCP gene family and functional analysis of TCP13 and TCP15a of tree peony. In this study, twenty-six TCP gene family members were screened and identified, and the characteristics of TCP encoded amino acids, evolutionary relationship and gene structure were analyzed by bioinformatics. And.TCP15a was found to inhibit anthocyanin biosynthesis by competing with MYB57 and interacting with WD40.

The plant cell wall, which is composed of cellulose, hemicellulose, pectin and lignin, is a dynamically changing network structure, that not only plays the role of a key line of defense in the process of plant resistance to external pressure and adaptation to environmental changes, but also plays the role of an information hub in the process of signal transmission. When the cell wall is damaged, cells sense cell wall changes and initiate early immune responses, such as hormonal changes, alterations in wall composition and modifications, and the production of disease-resistant secondary metabolites. Although the importance of the cell wall in plant immunity is widely recognized, the specific molecular mechanisms by which cell wall damage triggers immune responses remain poorly understood. The application of in situ unlabeled imaging techniques in plant cells is gradually increasing and has become an important tool for studying cell wall structure and function. This paper describes the interaction mechanism between the plant cell wall and the immune response to provide a scientific basis for a deeper understanding of plant life activities and improve crop disease resistance, and describes in situ non-labeled imaging of the cell wall to provide more technological options for advancing the study of the cell wall in the immune response.

INTRODUCTION Aronia melanocarpa also known as black chokeberry, belongs to the genus Aronia (Rosaceae). In addition to A. melanocarpa, Aronia includes A. arbutifolia or red chokeberry and A. prunifolia or purple chokeberry, both distributed naturally in North American, and an additional cultivated taxon, A. mitschurinii or Mitschurin’s chokeberry, originating from Europe. However, the species boundaries and relationships among the species of Aronia are not clear. Moreover, the taxonomic history of Aroniais complex, as species of this genus have formerly been placed in many different genera, such as Mespilus, Pyrus, Adenorachis, Sorbus, and Photinia. In the present study, we first sequenced and characterized the complete chloroplast (cp) genome of A. melanocarpa and compared its sequence with those of the cp genomes from 13 species of the family Rosaceae. The aims of this study were: (1) to increase our understanding of the structural patterns of complete cp genome of A. melanocarpa; (2) to investigate the phylogenetic relationships of A. melanocarpa with other Rosaceae species based on their cp genomes.

RATIONALE The chloroplast is a unique and essential organelle in green plants with vital roles in photosynthesis and carbon fixation. Comparative analyses of cp genomes between different plant species reveal intra- and inter-species rearrangements that have occurred during evolution, such as inverted repeat (IR) contraction and expansion. Based on these characteristics, the cp genome has been wildly used for species identification, phylogenetic analysis, and exploring the genetic basis of environmental adaptation.

RESULTS The complete A. melanocarpa cp genome was sequenced, analyzed, and compared with that from 13 other species in the Rosaceae. The cp genome is 159 772 bp and has a total guanine-cytosine (GC) content of 36.6%. It exhibits a typical quadripartite structure with four separate regions, including a large single copy (LSC) region of 87 810 bp and a small single copy (SSC) region of 19 200 bp separated by two inverted repeats (IRa and IRb) regions of 26 381 bp each. A total of 132 genes were annotated, including 87 protein-coding genes, 37 tRNAs, and eight rRNAs, with 22 duplicates in the IR regions. In total, 76 simple sequence repeats (SSRs) and 50 long repeats were detected. Phylogenetic analysis indicated that A. melanocarpa is most closely related to A. arbutifolia and forms a sister clade to Cydonia oblonga with weak support.

CONCLUSION We analyzed the complete cp genome of A. melanocarpa by using Illumina high-throughput sequencing technology. The sequence of A. melanocarpa cp genome could be further used for the development of molecular markers. Highly variable regions were detected in intergenic regions, such as trnK-rps16, rps16-trnQ, trnG-atpA, petN-psbM, trnT-psbD, psbZ-trnG, trnT-trnL, ndhC-trnV and accD-psaI, which might be useful for broad applications in genetic research studies as well as phylogenetic studies. Phylogenetic construction results strongly supported that A. melanocarpa was closest related to A. arbutifolia, followed by C. oblonga with weak support. This newly available genomic data for A. melanocarpa will provide a basis for future research on the population genetics and phylogenomics and will benefit the breeding studies and utilization of the genus Aronia.

Map of the chloroplast genome of Aronia melanocarpa and phylogenetic analyses among the 60 Rosaceae species using their complete chloroplast genomes. Aronia formed a clade with Dichotomanthes and Pourthiaea based on cpDNA tree. Moreover, A. melanocarpa is most closely related to A. arbutifolia and forms a sister clade to Cydonia oblonga with weak support.

INTRODUCTION Due to differences in breeding objectives, northeast japonica rice (Oryza sativa subsp. geng or japonica) is more advantageous than Japanese japonica rice in terms of yield level, whereas Japanese japonica rice is significantly better than Chinese japonica rice in terms of eating quality. Clarifying the genetic basis of the differences in eating quality between Chinese and Japanese japonica rice is highly valuable for the cultivation of high-yield and high-quality japonica rice.

RATIONALEA total of 274 Chinese and Japanese japonica rice varieties were used as research materials to quantify the eating quality of the rice and to analyze the genetic basis of the taste differences between Chinese and Japanese japonica rice by combining genome-wide association analysis with the downscaling of many parameters.

RESULTSThe results revealed that the significant differences in the taste values of Chinese and Japanese japonica rice were reflected in three textural parameters: the adhesion force (ADF), first recoverable deformation cycle (FRDC), and elasticity index (EI). Moreover, the correlation analysis between the taste values and 30 textural characters showed that 24 characters were significantly correlated with the taste value of rice. The 30 metrics of textural characterization were downscaled to four principal components that explained 80% of the phenotypic variation in the population, and the genome-wide associations of their eigenvalues were mined to two primary effector loci affecting the textural characterization of Chinese-Japanese japonica rice, qFPC4.3 and qFPC9.2.

CONCLUSION In this study, we quantified the parameters of eating quality from a qualitative perspective, and thus analyzed the genetic basis of the differences in eating quality between Chinese and Japanese rice, which provided valuable genetic information and a theoretical basis for the genetic improvement of the eating quality of japonica rice in China.

PCA analysis and genome-wide association studies based on principal component eigenvalues of texture characteristics indicators. PCA analysis was performed using 2021 data.

Pathogen infection is a serious threat to plant growth and development, causing severe crop yield reduction. The plant immune system, which is mainly composed of PTI (pattern-triggered immunity) and ETI (effector-triggered immunity), plays an essential role in resistance against pathogen infection. A large amount of research focused on resolving the key immune receptors/co-receptors, the components and regulation mechanisms of the PTI and ETI signaling pathways, and the biosynthesis and signaling pathways of the plant immune hormones salicylic acid and jasmonic acid. The major events during plant immune responses include pathogen recognition, the outburst of reactive oxygen species, Ca²⁺ influx, MAPK cascade signaling, and the induced expression of downstream defense genes. Recent studies have revealed that the expression of plant immune-related genes is not only regulated at the transcriptional level. The stability, translation efficiency, and translation products of their mRNAs are affected by a variety of post-transcriptional regulatory mechanisms, including alternative splicing, m⁶A modification, small RNAs, uORFs, and R-motifs. Here, we summarized the present understanding of the plant immune system and mainly introduced the latest studies of the post-transcriptional regulation of plant immunity. This review also covered some findings that showed how pathogen interferes with the host post-transcriptional regulatory machinery. Some post-transcriptional regulatory elements have been successfully applied in crops. This application provides new molecular tools for improving diseases resistance and contribution to food security, as well as useful components for molecular breeding.

INTRODUCTION Cucumber (Cucumis sativus) is one of the foremost vegetable crops globally. Photosynthesis intricately influences the fruit yield of cucumber, and leaf color determines the photosynthetic efficiency to a large extent. Therefore, Leaf color mutants serve as ideal materials for scrutinizing diverse physiological processes, including photomorphogenesis, chloroplast development, chlorophyll metabolism, and photosynthetic mechanisms. Currently, the molecular mechanisms underlying the yellowing lethal phenotype remain unclear.

RATIONALE In this study, a stable cucumber yellowing lethal mutant, ycl(yellow cotyledon lethal), was isolated from the near-isogenic line XYYH-2-1-1. The phenotype, leaf microstructure and chloroplast ultrastructure, as well as physiological and biochemical analyses, were conducted on the mutant ycl and the wild-type XYYH-3-1 to explore the physiological mechanisms underlying the yellowing lethal phenotype. Preliminary localisation of yellowing lethal mutation genes was performed by whole genome resequencing using BSA. The integration of transcriptome sequencing allowed us to analyze the expression of genes related to yellowing death and the main pathways. This approach laid a solid foundation for further investigation into the molecular mechanisms responsible for the lethal phenotype associated with yclyellowing.

RESULTS The ycl mutant exhibited yellow cotyledons, which ultimately withered and perished within approximately two weeks. Notably, its growth-inhibiting phenotype appeared to be light-independent. Compared to the wild type, ycl accumulated extremely low Chl a and Chl b contents, which was consistent with the blockade in the magnesium ion chelation process within the chlorophyll biosynthesis pathway. Microscopic and ultrastructural analyses revealed disordered ycl leaf structure and inhibited chloroplast development. Additionally, the ycl mutant displayed significantly increased antioxidant enzyme activities and malondialdehyde contents, suggesting elevated oxidative stress levels and robust antioxidant capacities. The substantial decrease in net photosynthetic rate and rise in intercellular CO₂ concentration in ycl were hypothesized to stem from reduced stomatal conductance, diminished chlorophyll content, and impaired chloroplast development in the mutant. Transcriptomic analyses suggested that key pathways including photosynthesis, flavonoid biosynthesis, chlorophyll metabolism, and reactive oxygen species metabolism were affected in ycl. The ycl mutant gene was preliminarily mapped to a region between 1.48 to 1.9 Mb on chromosome 3 through BSA-seq analysis, encompassing 41 candidate genes.

CONCLUSION The study investigated the physiological mechanisms underlying the yellowing lethal phenotype of the yclmutant, preliminarily mapped the mutant gene to chromosome 3, and identified differentially expressed genes (DEGs) and key pathways associated with the lethal phenotype. These findings provide valuable insights into the molecular mechanisms of chloroplast development in cucumber.

Phenotypic changes of WT and the ycl mutant at the cotyledon stage under natural light conditions, and preliminary mapping of the mutant gene.

Systemic acquired resistance (SAR) is a crucial defense mechanism in plants, which can significantly enhance the plant’s resistance to pathogenic microorganisms. SAR has systemic, persistent, and broad-spectrum characteristics, whose transcriptional regulation plays a central role in the process. Here, the research progress on transcriptional regulation of SAR from the synthesis of salicylic acid (SA), Pip/NHP, transcriptional regulation of NPR1, NPR3/NPR4 receptors and Pip/NHP mobile signals, as well as TGA, WRKY transcription factor family regulation was reviewed, providing a reference for a deeper understanding of plant immune regulatory networks, and systematic exploration of the mechanisms by which plants balanced growth and defense in complex environments.

The plant innate immune system serves as the primary defense against pathogen invasion, with well-established frameworks for receptor recognition and signal transduction mechanisms. This review highlights recent key breakthroughs in plant immunity research from Chinese institutions: (1) The discovery of novel mechanisms driving virulence evolution through asymmetric chromosome distribution in fungi and chromosome fusion in oomycetes; (2) Elucidation of the kinase MtLICK1/2-mediated molecular switch that precisely regulates the symbiosis-immunity trade-off via phosphorylation of MtLYK3 in legumes; (3) Identification of a “sensor-executor” paradigm where tandem kinases and NLR immune receptors cooperatively activate immunity in cereal crops; (4) Innovative strategies including co-transfer of sensor-helper NLR pairs to overcome taxonomic restrictions; and (5) Develop technology of autoactive NLR chimeras activated by pathogen protease cleavage for broad-spectrum resistance. These advances collectively deepen our understanding of plant-pathogen-environment interactions across three dimensions—pathogen adaptive evolution, sophisticated host immune regulation, and receptor engineering applications. Crucially, fundamental mechanistic insights have been successfully translated into crop genetic improvement practices. The integrated findings provide a robust theoretical foundation and actionable technological framework for designing novel crop varieties with durable, broad-spectrum disea- se resistance to address mounting agricultural biosecurity threats.

INTRODUCTION A preliminary tissue culture system for Phyllanthus acidus was established.

RATIONALE In this study, the stem tips of P. acidus were used as explants, and the schemes of primary culture, secondary proliferation culture and rooting culture were screened.

RESULTS The results showed that the optimal medium for primary culture was MS+2.0 mg·L^-1 6-BA+0.2 mg·L^-1 NAA, and the induced germination rate of explants reached 81.11%. The optimal medium for subculture was MS+1.0 mg·L^-1 6-BA+0.2 mg·L^-1 IBA, and the proliferation coefficient was 1.86. The optimal medium for rooting was MS+1.5 mg·L^-1 IBA, and the rooting rate reached 83.00%. After 7 days of cultivation, the plantlets were transplanted with perlite, peat soil and humus=1:1:1 (v/v/v), and the survival rate was 90%.

CONCLUSION The most suitable medium for primary culture using the stem tip of P. acidus as explant was MS medium and the phytohormones were 2.0 mg·L^-1 6-BA and 0.2 mg·L^-1 NAA; the optimal phytohormones for subculture were 1.0 mg·L^-1 6-BA and 0.2 mg·L^-1 IBA; the optimal phytohormone for rooting culture was 1.5 mg·L^-1 IBA.

INTRODUCTION: The TCP protein family is a plant-specific group of transcription factors known to regulate key biological processes, including growth, development, and stress responses. Despite their critical roles, the TCP gene family in Bergenia purpurascens remains uncharacterized. This study aims to systematically identify and analyze the BpTCP gene family in B. purpurascens using transcriptome-based bioinformatics approaches, providing insights into their potential functions in cold adaptation and secondary metabolism.

RATIONALE: B. purpurascens exhibits remarkable resilience to abiotic stresses, particularly cold, and contains abundant secondary metabolites. Given the documented roles of TCP genes in stress responses and metabolic regulation in other plants, we hypothesized that BpTCP genes may contribute to these traits. A comprehensive analysis of this gene family could reveal novel mechanisms underlying stress adaptation and metabolite synthesis, supporting future genetic improvement or biotechnological applications.

RESULTS: Through transcriptome-based bioinformatics analysis, we identified 16 BpTCP genes in B. purpurascens, which were phylogenetically classified into two major groups, with all members containing conserved TCP domains and closely related proteins sharing similar motif patterns. Tissue-specific expression profiling revealed distinct spatial expression patterns across different tissues, suggesting functional diversification among family members. Notably, partial genes, including BpTCP10, BpTCP1 and BpTCP12, exhibited significant expression changes under cold stress, implying their potential cold-responsive roles. Furthermore, expression levels of specific BpTCP genes correlated significantly with accumulation of various secondary metabolites, particularly flavonoids and phenolics, suggesting their regulatory involvement in metabolic pathways.

CONCLUSION: This study provides the first genome-wide characterization of the BpTCP gene family in B. purpurascens, demonstrating its potential roles in growth, cold stress response, and secondary metabolism. The differential expression of BpTCP genes under stress and their correlation with metabolite levels lay a foundation for future functional studies.

      

Expression pattern and metabolic correlation analysis of TCP gene family in Bergenia purpurascens.  A total of 16 BpTCP genes were identified in Bergenia purpurascens and classified into two major phylogenetic groups. All BpTCP genes contain conserved TCP domains, and proteins from the same evolutionary branch share similar motif compositions. Different BpTCP genes exhibit distinct tissue-specific expression patterns and display distinctive responses to cold stress. Furthermore, certain BpTCP genes demonstrate significant correlations with the accumulation of diverse metabolites.

INTRODUCTION: 14-3-3 proteins are a highly conserved protein family that specifically recognize phosphorylated target proteins and play crucial roles in plant abiotic stress responses. By interacting with AREB/ABF (ABA-responsive element binding protein/ABA-responsive element binding factor) transcription factors, 14-3-3 proteins participate in ABA signal transduction and regulate abiotic stress tolerance. TaGRF3-D is a 14-3-3 protein gene in wheat (Triticum aestivum), and our previous studies revealed that the expression of this gene was upregulated under ABA and abiotic stress.
RATIONALE: To explore the biological function of the TaGRF3-D gene, we cloned the gene, and investigated its subcellular localization and function under drought stress.
RESULTS: The results revealed that TaGRF3-D is highly conserved in monocotyledonous plants and is localizes in the nucleus and plasma membrane. Compared with the wild type, the Arabidopsis thaliana transgenic lines overexpressing TaGRF3-D presented significantly longer roots under PEG and ABA treatments and showed a markedly greater survival rate after drought stress. Yeast two-hybrid analysis revealed that TaGRF3-D interacted with wheat TaABF3-B, TaABF4-A, TaABF15-D, TaABF16-B, TaABF17-D, and TaABF18-B, but not with TaABF1-D, TaABF2-A or TaABF19-A.
CONCLUSION: These results suggest that TaABF3-D responds to ABA signaling by interacting with wheat TaABF transcription factors, thereby increasing the drought stress tolerance of transgenic plants.

Phenotypes of the TaGRF3-D transgenic lines and the wild type (WT) under drought stress (A) and interaction between the TaGRF3-D protein and the ABF protein (B). Bars=1 cm

INTRODUCTION: Anthracnose, primarily caused by Colletotrichum gloeosporioides is a main diseaseaffecting mangoes, leading to significant postharvest losses by deteriorating fruit quality and reducing shelf life. 

RATIONALE: Addressing postharvest anthracnose is a critical challenge in the mango industry. Biological control methods, such as utilizing antagonistic bacteria, offer sus-tainable alternatives to chemical treatments. This study investigates the efficacy of Ba-cillus velezensis in inhibiting C. gloeosporioides and its potential in preserving mango fruit quality. 

RESULTS: The application of B. velezensis culture filtrate (CF) effectively inhibited spore germination and mycelial growth of C. gloeosporioides. At CF concentrations of 2% and 4%, mycelial inhibition rates were 75.18% and 80.96%, respectively. In vivo experiments demonstrated that both bacterial suspension (CB) and CF treatments significantly re-duced lesion expansion on mangoes, with inhibition rates of 44.33% and 65.00%, respectively. Treated fruits exhibited a slower decrease in titratable acids and maintained higher levels of total phenols and flavonoids, indicating delayed ripening and extended shelf life. 

 CONCLUSION: Bacillus velezensis exhibits strong antagonistic activity against C. gloeosporioides, effectively controlling mango anthracnose and preserving fruit quality. Its application as a biocontrol agent holds promise for sustainable postharvest management in mango production.