Chinese Bulletin of Botany ›› 2023, Vol. 58 ›› Issue (1): 140-149.DOI: 10.11983/CBB22177
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Feifei Wang, Zhenxiang Zhou, Yi Hong, Yangyang Gu, Chao Lü, Baojian Guo, Juan Zhu, Rugen Xu*()
Received:
2022-07-31
Accepted:
2022-10-24
Online:
2023-01-01
Published:
2023-01-05
Contact:
*E-mail: rgxu@yzu.edu.cn
About author:
†These authors contributed equally to this paper
Feifei Wang, Zhenxiang Zhou, Yi Hong, Yangyang Gu, Chao Lü, Baojian Guo, Juan Zhu, Rugen Xu. Identification of the NF-YC Genes in Hordeum vulgare and Expression Analysis Under Salt Stress[J]. Chinese Bulletin of Botany, 2023, 58(1): 140-149.
Gene name | Gene ID | Chromo- some | Location | Amino acid length (aa) | Protein molecular weight (kDa) | pI | Instability index | Aliphatic index | Subcellular location |
---|---|---|---|---|---|---|---|---|---|
HvNF-YC1 | HORVU.MOREX.- r3.1HG0069390.1 | 1 | 447067437- 447072149 | 282 | 31.44 | 5.4 | 48.23 | 75.07 | Nucleus |
HvNF-YC2 | HORVU.MOREX.- r3.1HG0081770.1 | 1 | 489164568- 489164978 | 136 | 14.07 | 9.5 | 38.39 | 79.78 | Nucleus |
HvNF-YC3 | HORVU.MOREX.- r3.3HG0237950.1 | 3 | 54989815- 54991052 | 371 | 39.09 | 4.74 | 52.22 | 66.66 | Nucleus |
HvNF-YC4 | HORVU.MOREX.- r3.4HG0364520.1 | 4 | 231786893- 231791804 | 255 | 28.09 | 5.93 | 59.67 | 65.76 | Nucleus |
HvNF-YC5 | HORVU.MOREX.- r3.4HG0391570.1 | 4 | 499791697- 499793529 | 241 | 25.63 | 5.32 | 60.13 | 66.18 | Nucleus |
HvNF-YC6 | HORVU.MOREX.- r3.5HG0489580.1 | 5 | 474074907- 474075856 | 203 | 21.78 | 5.39 | 59.79 | 72.91 | Nucleus |
HvNF-YC7 | HORVU.MOREX.- r3.6HG0571700.1 | 6 | 135835186- 135838701 | 260 | 28.59 | 4.87 | 81.41 | 71.81 | Nucleus |
HvNF-YC8 | HORVU.MOREX.- r3.7HG0677850.1 | 7 | 160202157- 160203122 | 199 | 21.57 | 5.52 | 65.36 | 71.86 | Nucleus |
HvNF-YC9 | HORVU.MOREX.- r3.7HG0737530.1 | 7 | 597862664- 597863461 | 265 | 29.76 | 4.79 | 69.77 | 63.06 | Nucleus |
HvNF-YC10 | HORVU.MOREX.- r3.7HG0737680.1 | 7 | 598086832- 598087587 | 251 | 27.85 | 6.22 | 68.44 | 73.19 | Nucleus |
HvNF-YC11 | HORVU.MOREX.- r3.7HG0737720.1 | 7 | 598116971- 598117753 | 260 | 28.62 | 4.66 | 80.61 | 68.81 | Nucleus |
Table 1 Sequence information of HvNF-YCs gene family
Gene name | Gene ID | Chromo- some | Location | Amino acid length (aa) | Protein molecular weight (kDa) | pI | Instability index | Aliphatic index | Subcellular location |
---|---|---|---|---|---|---|---|---|---|
HvNF-YC1 | HORVU.MOREX.- r3.1HG0069390.1 | 1 | 447067437- 447072149 | 282 | 31.44 | 5.4 | 48.23 | 75.07 | Nucleus |
HvNF-YC2 | HORVU.MOREX.- r3.1HG0081770.1 | 1 | 489164568- 489164978 | 136 | 14.07 | 9.5 | 38.39 | 79.78 | Nucleus |
HvNF-YC3 | HORVU.MOREX.- r3.3HG0237950.1 | 3 | 54989815- 54991052 | 371 | 39.09 | 4.74 | 52.22 | 66.66 | Nucleus |
HvNF-YC4 | HORVU.MOREX.- r3.4HG0364520.1 | 4 | 231786893- 231791804 | 255 | 28.09 | 5.93 | 59.67 | 65.76 | Nucleus |
HvNF-YC5 | HORVU.MOREX.- r3.4HG0391570.1 | 4 | 499791697- 499793529 | 241 | 25.63 | 5.32 | 60.13 | 66.18 | Nucleus |
HvNF-YC6 | HORVU.MOREX.- r3.5HG0489580.1 | 5 | 474074907- 474075856 | 203 | 21.78 | 5.39 | 59.79 | 72.91 | Nucleus |
HvNF-YC7 | HORVU.MOREX.- r3.6HG0571700.1 | 6 | 135835186- 135838701 | 260 | 28.59 | 4.87 | 81.41 | 71.81 | Nucleus |
HvNF-YC8 | HORVU.MOREX.- r3.7HG0677850.1 | 7 | 160202157- 160203122 | 199 | 21.57 | 5.52 | 65.36 | 71.86 | Nucleus |
HvNF-YC9 | HORVU.MOREX.- r3.7HG0737530.1 | 7 | 597862664- 597863461 | 265 | 29.76 | 4.79 | 69.77 | 63.06 | Nucleus |
HvNF-YC10 | HORVU.MOREX.- r3.7HG0737680.1 | 7 | 598086832- 598087587 | 251 | 27.85 | 6.22 | 68.44 | 73.19 | Nucleus |
HvNF-YC11 | HORVU.MOREX.- r3.7HG0737720.1 | 7 | 598116971- 598117753 | 260 | 28.62 | 4.66 | 80.61 | 68.81 | Nucleus |
Figure 8 Tissue expression profile of NF-YC gene family members in Hordeum vulgare (A) and HvNF-YC expressions in the leaf and root of NN and TX varieties under salt stress (B) ROO1: Roots from seedlings (10 cm shoot stage); LEA: Shoots from seedlings (10 cm shoot stage); INF1: Young developing inflorescences (5 mm); INF2: Developing inflorescences (1-1.5 cm); NOD: Developing tillers (3rd internode); CAR5: Developing grain (5 days after pollination (DAP)); CAR15: Developing grain (15 DAP); ET1: Etiolated seedling (dark condition,10 days); LEM: Inflorescences (lemma, 42 DAP); LOD: Inflorescences (lodicule, 42 DAP); EPI: Epidermal strips (28 DAP); RAC: Inflorescences (rachis, 35 DAP); ROO2: Roots (28 DAP); SEN: Senescing leaves (56 DAP)
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