Chinese Bulletin of Botany ›› 2025, Vol. 60 ›› Issue (3): 377-392.DOI: 10.11983/CBB24117 cstr: 32102.14.CBB24117
• RESEARCH ARTICLES • Previous Articles Next Articles
Yang Li, Qu Xitong, Chen Zihang, Zou Tingting, Wang Quanhua, Wang Xiaoli*()
Received:
2024-07-30
Accepted:
2024-12-26
Online:
2025-05-10
Published:
2024-12-27
Contact:
*E-mail: wangxl@shnu.edu.cn
Yang Li, Qu Xitong, Chen Zihang, Zou Tingting, Wang Quanhua, Wang Xiaoli. Identification of the Spinach AT-hook Gene Family and Analysis of Expression Profiles[J]. Chinese Bulletin of Botany, 2025, 60(3): 377-392.
Gene ID | Forward primer (5′-3′) | Reverse primer (5′-3′) |
---|---|---|
SOV4g002370.1 | GTTCTAACCATCTCCGCAAT | TGAATGGGTGAAATTGGCAT |
SOV5g038710.1 | GAGCGGCTATGATGGAG | GGATCTGATCTGTCCATGTC |
SOV1g029900.1 | TAAGATGGAGCAACAACAGG | TCGGGTTCTGATTATCCTCT |
SOV6g041850.1 | ATATCGGCATCACAACATGG | AGTGGTTTTGGAGTTGAAGT |
SOV2g030150.1 | ATGGAAGGCCTCTACCACC | GTGGTGAAACTGATGATGCTG |
SOV6g047350.1 | GACTCTCGTGGCCCATCTGC | GTAAGGTGAATTTGATTGGTGG |
SOV2g031340.1 | GAGAGGATTAGCCGAGTTAC | CCCGACATTTGATTGGAAAG |
SOV3g001110.1 | GTAGTTCAGGGGTAACTGTG | TTTTCACCCCTAGCTGTTAC |
SOV2g038950.1 | GATAACAATGCTCAAAACAATG | GTTGGAATTTGGAAGGATGAG |
SOV4g018880.1 | CCGAATGAACAAAGCGGAC | GACATTCCATTGGTGGCGG |
SOV5g038610.1 | TCTGAAAATGACGTCGGTAG | CGGCTTATAAACTGCATTCC |
SOV6g041780.1 | GTAGTAAGGTCAGATGCTCC | CATACTTCCTTGGTCTACCC |
SOV2g029980.1 | GGTGACAGTAATAGGAGCAG | TTACTGGAGTAACATCCCCA |
SOV5g021850.1 | TCAGGACCTGGTAGCTTTTA | AAAGTCATCCCGGAATTAGG |
SOV6g040610.1 | GGATGGGAGAGAAGGTATGGC | CCAACTGCCCCAGGAATTGT |
SOV4g057830.1 | ATAACGCCCTGGTGCAACTG | TGTGGCCTCCATCCGAACACAT |
SOV4g019010.1 | ACGAACAACCCGGACAACTT | ACCGCCATGATTCCATCCAT |
SOV6g040700.1 | TTGCCTCCGGTCCTGTGGTTATTAT | TCAGGTCTTTGCCAGTGATCTACC |
SOV6g047370.1 | TCCGGTCCTGTGGTTATTATGGC | TCAGGTCTTTGCCAGTGATCTACC |
18S | CCATAAACGATGCCGACCAG | AGCCTTGCGACCATACTCCC |
Table 1 Sequences of the primers used in this study
Gene ID | Forward primer (5′-3′) | Reverse primer (5′-3′) |
---|---|---|
SOV4g002370.1 | GTTCTAACCATCTCCGCAAT | TGAATGGGTGAAATTGGCAT |
SOV5g038710.1 | GAGCGGCTATGATGGAG | GGATCTGATCTGTCCATGTC |
SOV1g029900.1 | TAAGATGGAGCAACAACAGG | TCGGGTTCTGATTATCCTCT |
SOV6g041850.1 | ATATCGGCATCACAACATGG | AGTGGTTTTGGAGTTGAAGT |
SOV2g030150.1 | ATGGAAGGCCTCTACCACC | GTGGTGAAACTGATGATGCTG |
SOV6g047350.1 | GACTCTCGTGGCCCATCTGC | GTAAGGTGAATTTGATTGGTGG |
SOV2g031340.1 | GAGAGGATTAGCCGAGTTAC | CCCGACATTTGATTGGAAAG |
SOV3g001110.1 | GTAGTTCAGGGGTAACTGTG | TTTTCACCCCTAGCTGTTAC |
SOV2g038950.1 | GATAACAATGCTCAAAACAATG | GTTGGAATTTGGAAGGATGAG |
SOV4g018880.1 | CCGAATGAACAAAGCGGAC | GACATTCCATTGGTGGCGG |
SOV5g038610.1 | TCTGAAAATGACGTCGGTAG | CGGCTTATAAACTGCATTCC |
SOV6g041780.1 | GTAGTAAGGTCAGATGCTCC | CATACTTCCTTGGTCTACCC |
SOV2g029980.1 | GGTGACAGTAATAGGAGCAG | TTACTGGAGTAACATCCCCA |
SOV5g021850.1 | TCAGGACCTGGTAGCTTTTA | AAAGTCATCCCGGAATTAGG |
SOV6g040610.1 | GGATGGGAGAGAAGGTATGGC | CCAACTGCCCCAGGAATTGT |
SOV4g057830.1 | ATAACGCCCTGGTGCAACTG | TGTGGCCTCCATCCGAACACAT |
SOV4g019010.1 | ACGAACAACCCGGACAACTT | ACCGCCATGATTCCATCCAT |
SOV6g040700.1 | TTGCCTCCGGTCCTGTGGTTATTAT | TCAGGTCTTTGCCAGTGATCTACC |
SOV6g047370.1 | TCCGGTCCTGTGGTTATTATGGC | TCAGGTCTTTGCCAGTGATCTACC |
18S | CCATAAACGATGCCGACCAG | AGCCTTGCGACCATACTCCC |
Gene ID | Genome location | Subcellular localization | Length (bp) | Amino acid (aa) | Molecular weight (kDa) | PI |
---|---|---|---|---|---|---|
SOV1g029900.1 | Chr. 1: 113135928-113136926 | NLS, Chl | 999 | 333 | 33.84 | 5.37 |
SOV4g019010.1 | Chr. 4: 52394687-52395604 | NLS | 918 | 306 | 31.47 | 6.16 |
SOV4g057830.1 | Chr. 4: 186409628-186410449 | NLS, Chl | 822 | 274 | 27.68 | 6.42 |
SOV5g038710.1 | Chr. 5: 123243932-123247784 | NLS | 819 | 273 | 26.72 | 6.43 |
SOV6g040700.1 | Chr. 6: 140433598-140434404 | NLS, Cyt | 807 | 269 | 28.36 | 9.07 |
SOV6g047370.1 | Chr. 6: 148547185-148548063 | Chl, NLS | 879 | 293 | 30.18 | 6.04 |
SOV2g030150.1 | Chr. 2: 101786656-101787666 | NLS, Chl | 1011 | 337 | 34.80 | 7.22 |
SOV6g041850.1 | Chr. 6: 141988749-141989711 | NLS, Chl | 963 | 321 | 32.97 | 5.97 |
SOV2g038950.1 | Chr. 2: 112654862-112655896 | Cyt, NLS | 1035 | 345 | 36.80 | 6.85 |
SOV4g018880.1 | Chr. 4: 52004210-52011645 | NLS | 1041 | 347 | 36.10 | 8.46 |
SOV2g031340.1 | Chr. 2: 103380711-103385136 | NLS | 990 | 330 | 34.05 | 9.58 |
SOV6g040610.1 | Chr. 6: 140337052-140344304 | NLS, Cyt | 1044 | 348 | 35.29 | 9.89 |
SOV2g029980.1 | Chr. 2: 101504484-101511484 | NLS, Chl | 1032 | 344 | 35.92 | 9.44 |
SOV6g041780.1 | Chr. 6: 141900514-141905585 | NLS | 1026 | 342 | 35.70 | 8.33 |
SOV3g001110.1 | Chr. 3: 1145951-1151558 | Chl, NLS | 1089 | 363 | 37.96 | 5.73 |
SOV5g021850.1 | Chr. 5: 39407625-39411618 | NLS, Chl | 1089 | 363 | 37.31 | 7.87 |
SOV5g038610.1 | Chr. 5: 122545368-122554893 | NLS | 1092 | 364 | 37.09 | 9.87 |
SOV6g047350.1 | Chr. 6: 148521377-148529101 | NLS, Chl | 1413 | 471 | 50.13 | 8.79 |
SOV4g002370.1 | Chr. 4: 2764521-2765501 | NLS, Cyt | 981 | 327 | 36.06 | 6.04 |
Table 2 Information on the SoAHL gene family members in spinach
Gene ID | Genome location | Subcellular localization | Length (bp) | Amino acid (aa) | Molecular weight (kDa) | PI |
---|---|---|---|---|---|---|
SOV1g029900.1 | Chr. 1: 113135928-113136926 | NLS, Chl | 999 | 333 | 33.84 | 5.37 |
SOV4g019010.1 | Chr. 4: 52394687-52395604 | NLS | 918 | 306 | 31.47 | 6.16 |
SOV4g057830.1 | Chr. 4: 186409628-186410449 | NLS, Chl | 822 | 274 | 27.68 | 6.42 |
SOV5g038710.1 | Chr. 5: 123243932-123247784 | NLS | 819 | 273 | 26.72 | 6.43 |
SOV6g040700.1 | Chr. 6: 140433598-140434404 | NLS, Cyt | 807 | 269 | 28.36 | 9.07 |
SOV6g047370.1 | Chr. 6: 148547185-148548063 | Chl, NLS | 879 | 293 | 30.18 | 6.04 |
SOV2g030150.1 | Chr. 2: 101786656-101787666 | NLS, Chl | 1011 | 337 | 34.80 | 7.22 |
SOV6g041850.1 | Chr. 6: 141988749-141989711 | NLS, Chl | 963 | 321 | 32.97 | 5.97 |
SOV2g038950.1 | Chr. 2: 112654862-112655896 | Cyt, NLS | 1035 | 345 | 36.80 | 6.85 |
SOV4g018880.1 | Chr. 4: 52004210-52011645 | NLS | 1041 | 347 | 36.10 | 8.46 |
SOV2g031340.1 | Chr. 2: 103380711-103385136 | NLS | 990 | 330 | 34.05 | 9.58 |
SOV6g040610.1 | Chr. 6: 140337052-140344304 | NLS, Cyt | 1044 | 348 | 35.29 | 9.89 |
SOV2g029980.1 | Chr. 2: 101504484-101511484 | NLS, Chl | 1032 | 344 | 35.92 | 9.44 |
SOV6g041780.1 | Chr. 6: 141900514-141905585 | NLS | 1026 | 342 | 35.70 | 8.33 |
SOV3g001110.1 | Chr. 3: 1145951-1151558 | Chl, NLS | 1089 | 363 | 37.96 | 5.73 |
SOV5g021850.1 | Chr. 5: 39407625-39411618 | NLS, Chl | 1089 | 363 | 37.31 | 7.87 |
SOV5g038610.1 | Chr. 5: 122545368-122554893 | NLS | 1092 | 364 | 37.09 | 9.87 |
SOV6g047350.1 | Chr. 6: 148521377-148529101 | NLS, Chl | 1413 | 471 | 50.13 | 8.79 |
SOV4g002370.1 | Chr. 4: 2764521-2765501 | NLS, Cyt | 981 | 327 | 36.06 | 6.04 |
Figure 4 Regional collinearity of the SoAHL gene in spinach The homologous chromosome regions were connected with the SoAHL genes by red lines, and the outer ring represents the gene density heatmap.
Figure 5 Collinearity analysis of the AHL gene family in different species The red lines between the bars indicate collinear genes among members of the AHL gene family across species; the fine gray line shows all the collinear genes contained between species. At: Arabidopsis thaliana; Os: Oryza sativa; So: Spinacia oleracea
Figure 7 Folate content (A) and expression pattern of SoAHL gene (B) in three tissues of spinach L: Leaf; P: Petiole; R: Root. Different lowercase letters indicate significant differences(P<0.05).
Salicylic acid | Days of treatments (d) | Shoot fresh biomass (g) | Root fresh biomass (g) | Shoot dry biomass (g) | Root dry biomass (g) |
---|---|---|---|---|---|
Mock | 0 | 0.737±0.171 d | 0.053±0.004 b | 0.083±0.013 b | 0.004±0.001 a |
1 | 1.042±0.049 c | 0.076±0.016 b | 0.083±0.013 b | 0.030±0.036 a | |
3 | 1.097±0.125 c | 0.066±0.008 b | 0.095±0.014 b | 0.008±0.002 a | |
5 | 1.304±0.017 b | 0.079±0.016 b | 0.132±0.028 a | 0.012±0.008 a | |
7 | 1.511±0.054 a | 0.104±0.016 a | 0.111±0.020 ab | 0.010±0.003 a | |
SA50 | 0 | 0.800±0.190 c | 0.061±0.003 a | 0.087±0.015 a | 0.007±0.003 a |
1 | 1.123±0.116 b | 0.077±0.015 a | 0.123±0.032 a | 0.012±0.005 a | |
3 | 1.083±0.115 b | 0.088±0.056 a | 0.339±0.441 a | 0.010±0.003 a | |
5 | 1.303±0.080 ab | 0.069±0.010 a | 0.096±0.018 a | 0.010±0.006 a | |
7 | 1.501±0.085 a | 0.077±0.015 a | 0.094±0.038 a | 0.049±0.070 a |
Table 3 Effects of salicylic acid (SA) treatment on the biomass of spinach
Salicylic acid | Days of treatments (d) | Shoot fresh biomass (g) | Root fresh biomass (g) | Shoot dry biomass (g) | Root dry biomass (g) |
---|---|---|---|---|---|
Mock | 0 | 0.737±0.171 d | 0.053±0.004 b | 0.083±0.013 b | 0.004±0.001 a |
1 | 1.042±0.049 c | 0.076±0.016 b | 0.083±0.013 b | 0.030±0.036 a | |
3 | 1.097±0.125 c | 0.066±0.008 b | 0.095±0.014 b | 0.008±0.002 a | |
5 | 1.304±0.017 b | 0.079±0.016 b | 0.132±0.028 a | 0.012±0.008 a | |
7 | 1.511±0.054 a | 0.104±0.016 a | 0.111±0.020 ab | 0.010±0.003 a | |
SA50 | 0 | 0.800±0.190 c | 0.061±0.003 a | 0.087±0.015 a | 0.007±0.003 a |
1 | 1.123±0.116 b | 0.077±0.015 a | 0.123±0.032 a | 0.012±0.005 a | |
3 | 1.083±0.115 b | 0.088±0.056 a | 0.339±0.441 a | 0.010±0.003 a | |
5 | 1.303±0.080 ab | 0.069±0.010 a | 0.096±0.018 a | 0.010±0.006 a | |
7 | 1.501±0.085 a | 0.077±0.015 a | 0.094±0.038 a | 0.049±0.070 a |
Figure 8 Phenotype (A), total folate content (B) of spinach and expression analysis of SoAHL (C) under salicylic acid (SA) treatment CKD5: Control group for 5 days; SAD5: SA treatment for 5 days; CKD7: Control group for 7 days; SAD7: SA treatment for 7 days. The stars indicate significant differences between treatments at the same time (P<0.05, Tukey test); the numbers in the heat map boxes respresent gene relative expression. Bars=5 cm
Figure 9 Changes in the relative expression level of the SoAHLa (A) and the folate content of leaf (B) after transient overexpression of SoAHLa CK: Spinach leaves injected with empty pEG100-SW; OE: Spinach leaves injected with vector containing SOV4g018880.1. * indicate significant differences between treatments at the same time (P<0.05, Tukey test).
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