植物学报

• 研究报告 •    

铁十字秋海棠DNA甲基化转移酶全基因组鉴定及表达分析

陈婷欣1, 符敏2, 李娜3, 杨蕾蕾3, 李凌飞3, 钟春梅1   

  1. 1华南农业大学生物质工程研究院, 农业农村部能源植物资源与利用重点实验室, 广东省农林生物质工程技术研究中心, 广州 510642; 2深圳市中国科学院仙湖植物园, 深圳市南亚热带植物多样性重点实验室, 深圳518004; 3中山市农业科技推广中心, 中山528400


  • 收稿日期:2024-01-22 修回日期:2024-05-05 出版日期:2024-05-16 发布日期:2024-05-16
  • 通讯作者: 钟春梅, 李凌飞
  • 基金资助:

    广东省自然科学基金(No.2021A1515011315)和深圳市城管科研项目(No.202205, No.202408)

Identification and Expression Analysis of DNA Methyltransferase in Begonia masoniana

Tingxin Chen1, Min Fu3, Na Li2, Leilei Yang2, Lingfei Li2*, Chunmei Zhong1*   

  1. 1Guangdong Engineering Technology Research Center of Agricultural and Forestry Biomass, Key Laboratory of Energy Plants Resource and Utilization, Ministry of Agriculture and Rural Affairs, Institute of Biomass Engineering, South China Agricultural University, Guangzhou 510642, China; 2Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, China; 3Zhongshan Agricultural Science and Technology Extension Center, Zhongshan 528400, China

  • Received:2024-01-22 Revised:2024-05-05 Online:2024-05-16 Published:2024-05-16
  • Contact: Chunmei Zhong, Lingfei Li

摘要: DNA甲基化是重要的表观遗传修饰之一, 参与调控植物的基因组稳定性、发育以及胁迫响应等过程。DNA甲基化转移酶是DNA甲基化的关键酶。为了解铁十字秋海棠(Begonia masoniana) DNA甲基化转移酶的功能, 本研究采用生物信息学方法从铁十字秋海棠基因组中鉴定出5个编码DNA甲基化转移酶的基因。根据序列特征将其分为CMT、MET和DRM三大类。不同类别成员的基因序列长度和内含子数量存在明显差异, 但同类别成员的基因结构和保守结构域具有高度保守性。这些蛋白均定位于细胞核, 且其基因启动子含有大量的光响应、MYB结合以及植物激素响应等元件。激素响应模式分析表明, CMT3类在GA、SA和NAA处理下基因表达显著降低, CMT2类在MeJA和NAA处理下基因表达显著降低, 而MET类和DRM类分别在GA和ABA处理下基因表达显著提高。此外, 组织特异性分析发现, 叶片中BmaCMT2-5BmaDRM2-2表达量明显高于其它组织器官, 且这2个酶的基因与BmaMET1-15在叶片红色部分的表达高于绿叶部分, 推测这3个DNA甲基化转移酶可能在叶斑形成过程发挥重要作用。

关键词: 铁十字秋海棠, 叶斑, DNA甲基化转移酶, 植物激素

Abstract: DNA methylation is one of the important epigenetic modifications involved in the regulation of plant genome stability, development and stress responses. DNA methylation transferase is the key enzyme of DNA methylation. In order to investigate the function of DNA methyltransferase in Begonia masoniana, bioinformatics analysis was used to identify the genes encoding DNA methyltransferase, which 5 genes were obtained from the genome of B. masoniana. According to their structural characteristics, they were divided into three categories: CMT, MET and DRM. The gene sequence length and intron number of members in different categories were significantly different, but the gene structure and conserved domains of members in the same category were highly conserved. These proteins are located in the nucleus, and their promoters contain a large number of cis-acting elements such as light response, MYB binding, and plant hormone response elements.  Analysis of hormone response patterns also showed that the gene expression of CMT3 was significantly decreased under GA, SA and NAA, and the gene expression of CMT2 was significantly decreased under MeJA and NAA, while MET and DRM significantly increased respectively gene expression under GA and ABA. In addition, tissue specific analysis showed that the expression levels of BmaCMT2-5 and BmaDRM2-2 in leaves were significantly higher than those of other tissues, while the expressions of these two enzymes and BmaMET1-15 in red part of leaves were significantly higher than that of green part, implying that these three DNA methyltransferases may be involved in regulating the formation of leaf variegation.

Key words: Begonia masoniana, leaf variegation, DNA methylase, phytohormones