植物学报 ›› 2024, Vol. 59 ›› Issue (2): 0-.DOI: 10.11983/CBB23035

• 专题论坛 •    

重要林木樟科植物全基因组测序研究进展

杨智1, 2, 3 , 杨永1, 2, 3*   

  1. 1南京林业大学南方现代林业协同创新中心, 南京210037; 2南京林业大学生物与环境学院, 南京210037; 3南京林业大学国家林业和草原局亚热带森林生物多样性保护重点实验室, 南京210037
  • 收稿日期:2023-03-13 修回日期:2023-09-13 出版日期:2024-03-01 发布日期:2024-03-26
  • 通讯作者: 杨永
  • 基金资助:
    国家自然科学基金(No. 32270217, No.31970205)、江苏省自然科学基金(No.BK20211279)和南京林业大学水杉英才项目

Research Advances on Nuclear Genomes of Economically Important Trees of Lauraceae

Zhi Yang1, 2, 3, Yong Yang1, 2, 3*   

  1. 1Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, 159 Longpan Rd., Nanjing 210037, China; 2 College of Biology and the Environment, Nanjing Forestry University, 159 Longpan Rd., Nanjing 210037, China; 3 Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry University, 159 Longpan Rd., Nanjing 210037, China
  • Received:2023-03-13 Revised:2023-09-13 Online:2024-03-01 Published:2024-03-26
  • Contact: Yong Yang

摘要: 随着近年来测序技术的革新、测序成本的降低和生物信息软件的开发, 植物全基因组研究蓬勃发展。樟科(Lauraceae)隶属于被子植物木兰类, 泛热带分布, 物种多样性高, 其中很多具有重要经济利用和生态价值的物种, 目前已发表包括8个物种的13个基因组。该文从樟科全基因组研究现状、基因组特征、起源和进化及功能基因和基因家族4个方面进行综述, 着重介绍了基于组学数据的木兰类及樟科的系统发生, 樟科经历的多倍化事件, 以及与樟科花器官进化和代谢产物等相关的基因鉴定。另外, 结合樟科研究现状和存在的问题, 本文还展望了樟科基因组研究值得深入的内容, 包括 (1) 调查樟科基因组的基本特征; (2) 增加测序基因组分支的代表性; (3) 关注具有特殊价值的物种; (4) 多方面对功能基因进行深入挖掘。

关键词: 樟科, 演化, 核基因组, 功能基因, 系统发生

Abstract: With the rapid development of sequencing technology and bioinformatic analytic tools, and the reduction of sequencing cost, the studies of plant genomes has grown in an unprecedent speed. Lauraceae belong to Magnoliids and contain high species diversity in pantropics. Species of this family are mostly woody and economically and ecologically important. Up to now, 13 genomes belonging to eight species have been published in the family Lauraceae. Here, we review the recent advances on nuclear genomes of Lauraceae from four aspects: an overview of published nuclear genomes, characteristics of genomes of Lauraceae, evolution and phylogeny, function genes and gene families. We highlight the recent achievements in phylogeny of magnoliids and Lauraceae based on genomic data, whole genome duplication events, and function genes / gene families of Lauraceae related to the floral organ determination and metabolites. Based on recent advances and problems of genomic studies of Lauraceae, we propose four promising directions for further studies of the family: (1) investigating genome characteristics of the family with extensive sampling; (2) increasing the representation of species sampling in all major clades, e.g. at the tribal level; (3) tackling species with special value, e.g. Laurus nobilis etc.; (4) exploring function genes of various aspects.

Key words: Lauraceae, evolution, nuclear genome, function gene, phylogeny