Chinese Scientist Generated High-quality Genome Sequences for indica Rice*

doi:10.11983/CBB16205

Abstract

Abstract: In 2005, the International Rice Genome Sequencing Project conducted by a multi-country consortium of research institutes, has published the reference genome sequence of Oryza sativa subsp. japonica cv. ‘Nipponbare’. Recently, Chinese scientist generated high-quality genome sequences of two elite indica rice varieties Zhenshan 97 and Minghui 63, which will have important implications for functional genomics studies and molecular breeding in indica rice.

Key words: indica rice, genome, genetic diversity, heterosis

Xuehui Huang. Chinese Scientist Generated High-quality Genome Sequences for indica Rice^*[J]. Chinese Bulletin of Botany, 2017, 52(1): 1-3.

Add to citation manager EndNote|Ris|BibTeX

URL: https://www.chinbullbotany.com/EN/10.11983/CBB16205

https://www.chinbullbotany.com/EN/Y2017/V52/I1/1

References 5

[1]	International Rice Genome Sequencing Project (2005). The map-based sequence of the rice genome.Nature 436, 793-800.
[2]	Schmutz J, Cannon SB, Schlueter J, Ma JX, Mitros T, Nelson W, Hyten DL, Song QJ, Thelen JJ, Cheng JL, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu SQ, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du JC, Tian ZX, Zhu LC, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010). Genome sequence of the palaeopolyploid soybean.Nature 463, 178-183.
[3]	Schnable PS, Ware D, Fulton RS, Stein JC, Wei FS, Pasternak S, Liang CZ, Zhang JW, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du FY, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen WZ, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He RF, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin JK, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren LY, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han YJ, Lee H, Li PH, Lisch DR, Liu SZ, Liu ZJ, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang LX, Yu Y, Zhang LF, Zhou SG, Zhu Q, Bennetzen JL, Dawe RK, Jiang JM, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK (2009). The B73 maize genome: complexity, diversity, and dynamics. Sci- ence 326, 1112-1115.
[4]	Xue WY, Xing YZ, Weng XY, Zhao Y, Tang WJ, Wang L, Zhou HJ, Yu SB, Xu CG, Li XH, Zhang QF (2008). Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.Nat Genet 40, 761-767.
[5]	Zhang JW, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li WM, Song JM, Xie WB, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang YD, Sun S, Jiao WB, Lü F, Du BG, Luo MZ, Maldonado CE, Goicoechea JL, Xiong LZ, Wu CY, Xing YZ, Zhou DX, Yu SB, Zhao Y, Wang GW, Yu YS, Luo YJ, Zhou ZW, Hurtado BEP, Danowitz A, Wing RA, Zhang QF (2016). Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.Proc Natl Acad Sci USA 113, E5163-E5171.

[1]	Xiaoxu Jia, Wanqiang Chen, Xiujun Tang, Yanfeng Fan, Jing Zhang, Haiwei Wang, Yushi Gao. Genetic diversity and gene introgression of mitochondrial DNA control region in indigenous chickens from Southwest China [J]. Biodiv Sci, 2026, 34(5): 26003-.
[2]	Chuangxin Wang, Jianqi Li, Ying Zhang, Dong Han, Jing Fang, Enguang Zhao, Hua Huang, Lingling Da, Ji Zhang. Smart Breeding: Integration and Application from High-Throughput Phenotyping to Genome Selection [J]. Chinese Bulletin of Botany, 2026, 61(4): 1-0.
[3]	Luhong Wang, Bo Li, Panyan Yang, Jiaqin Huang, Yuting Xie, Xin Du, Yi Wen, Bin Wang. Effects of ecological factors on the multidimensional diversity of breeding birds communities in Sichuan Province [J]. Biodiv Sci, 2026, 34(4): 25464-.
[4]	Longhao Chen, Ruijuan Yang, Xiaoyi Yuan, Sinian Xing, Yun Zang, Fan Wu, Jiyu Zhang, Xiaochun Qin, Wenwen Liu, Chunxiang Fu. Development of High-efficiency Genome Editing System for Hair Roots in Melilotus albus [J]. Chinese Bulletin of Botany, 2026, 61(1): 102-113.
[5]	Yuan Jiang, Beixi Huang, Xueyuan Jia, Si Liang, Yutong Xie, Ping Fan, Gang Song. An approach for estimating haplotype richness from DNA sequences with unequal lengths [J]. Biodiv Sci, 2026, 34(1): 25263-.
[6]	Tenzin Nyima, Wei Sun, Cong Li, Shuyi Zhang, Zhunan Zhao, Yongqiang Xu, Zhuoma Pubu, Shiqi Luo, Wa Da, Xin Zhou. The chloroplast genome dataset of flowering plants from the Jilong Valley region in Xizang [J]. Biodiv Sci, 2025, 33(9): 25270-.
[7]	Zhicheng Zhou, Tianling Cao, Ruyao Liu, Qiqi Ding, Ke Ma, Liping Yang, Chuanjiang Zhou, Guoxing Nie, Yongtao Tang. Genetic diversity and structure of Pseudorasbora parva population in the Yellow River basin based on the mitochondrial COI gene [J]. Biodiv Sci, 2025, 33(8): 24501-.
[8]	Ruxiao Wang, Boyang Shi, Da Pan, Hongying Sun. Biodiversity patterns and conservation gaps of the endemic freshwater crab genus Sinopotamon in China [J]. Biodiv Sci, 2025, 33(8): 25123-.
[9]	Xin Peng, Chuan Liu, Xiaolei Huang. Spatiotemporal pattern analysis of eukaryotic genetic data based on the GenBank database [J]. Biodiv Sci, 2025, 33(8): 25184-.
[10]	Qilong Yu, Minhui Hao, Huaijiang He, Chunyu Zhang, Xiuhai Zhao. Relationships of biodiversity and productivity change with forest succession in Changbai Mountains: Insights from species, traits, and phylogeny [J]. Biodiv Sci, 2025, 33(8): 25060-.
[11]	Fengying Wang, Zengyuan Wu, Han Cui, Yinlei Li, Lijuan Deng, Hong Wang, Jie Liu. Species boundaries of cannabina Clade of Urtica in the Third Pole [J]. Biodiv Sci, 2025, 33(8): 25138-.
[12]	Ping Fan, Huan Wang, Zhixin Wen, Gang Song, Fuming Lei. Impact of climatic factors on the genetic diversity-species area relationship of birds [J]. Biodiv Sci, 2025, 33(8): 25072-.
[13]	Ruixiang Xue, Xuerong Ma, Jiongwen Wu, Aijun Liu, Xiquan Zhang, Congliang Ji, Yingshan Yin, Weijian Zhu, Qingbin Luo. Genetic diversity and genetic structure of Zhongshan partridge duck populations [J]. Biodiv Sci, 2025, 33(8): 24592-.
[14]	Ping Fan, Zhixin Wen, Gang Song. The effect of climatic factors and anthropogenic activities on different genetic diversity indicators of amphibians and mammals [J]. Biodiv Sci, 2025, 33(8): 25022-.
[15]	Huixia Li, Yu Li, Xin Ning, Xiaochen Li, Tianrui Wang, Yigang Song, Xiling Dai, Sisi Zheng, Xin Zhong. Genetic diversity and genetic structure of Gymnospermium kiangnanense based on chloroplast genome [J]. Biodiv Sci, 2025, 33(8): 25149-.

Chinese Scientist Generated High-quality Genome Sequences for indica Rice^*

RichHTML

PDF (PC)

Knowledge

Abstract

Cite this article

share this article

References 5

Related Articles 15

Recommended Articles

Metrics

Comments