Chinese Scientist Generated High-quality Genome Sequences for indica Rice*

doi:10.11983/CBB16205

Abstract

Abstract: In 2005, the International Rice Genome Sequencing Project conducted by a multi-country consortium of research institutes, has published the reference genome sequence of Oryza sativa subsp. japonica cv. ‘Nipponbare’. Recently, Chinese scientist generated high-quality genome sequences of two elite indica rice varieties Zhenshan 97 and Minghui 63, which will have important implications for functional genomics studies and molecular breeding in indica rice.

Key words: indica rice, genome, genetic diversity, heterosis

Xuehui Huang. Chinese Scientist Generated High-quality Genome Sequences for indica Rice^*[J]. Chinese Bulletin of Botany, 2017, 52(1): 1-3.

Add to citation manager EndNote|Ris|BibTeX

URL: https://www.chinbullbotany.com/EN/10.11983/CBB16205

https://www.chinbullbotany.com/EN/Y2017/V52/I1/1

References 5

[1]	International Rice Genome Sequencing Project (2005). The map-based sequence of the rice genome.Nature 436, 793-800.
[2]	Schmutz J, Cannon SB, Schlueter J, Ma JX, Mitros T, Nelson W, Hyten DL, Song QJ, Thelen JJ, Cheng JL, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu SQ, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du JC, Tian ZX, Zhu LC, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010). Genome sequence of the palaeopolyploid soybean.Nature 463, 178-183.
[3]	Schnable PS, Ware D, Fulton RS, Stein JC, Wei FS, Pasternak S, Liang CZ, Zhang JW, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du FY, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen WZ, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He RF, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin JK, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren LY, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han YJ, Lee H, Li PH, Lisch DR, Liu SZ, Liu ZJ, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang LX, Yu Y, Zhang LF, Zhou SG, Zhu Q, Bennetzen JL, Dawe RK, Jiang JM, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK (2009). The B73 maize genome: complexity, diversity, and dynamics. Sci- ence 326, 1112-1115.
[4]	Xue WY, Xing YZ, Weng XY, Zhao Y, Tang WJ, Wang L, Zhou HJ, Yu SB, Xu CG, Li XH, Zhang QF (2008). Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.Nat Genet 40, 761-767.
[5]	Zhang JW, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li WM, Song JM, Xie WB, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang YD, Sun S, Jiao WB, Lü F, Du BG, Luo MZ, Maldonado CE, Goicoechea JL, Xiong LZ, Wu CY, Xing YZ, Zhou DX, Yu SB, Zhao Y, Wang GW, Yu YS, Luo YJ, Zhou ZW, Hurtado BEP, Danowitz A, Wing RA, Zhang QF (2016). Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.Proc Natl Acad Sci USA 113, E5163-E5171.

[1]	黄承玲, Han Li Rong, Ling Qing Hong, Xiong Yang Sheng, Ling Tian Xiao, Xia Guowei Xia Guowei, Ren Chen Zheng, Wei Zhou. Study on genetic conservation of Rhododendron liboense based on SNP molecular markers，a plant species with extremely small populations [J]. , 2025, 49(濒危植物的保护与恢复): 0-.
[2]	Juan Cui, Xiaoyu Yu, Yuejiao Yu, Chengwei Liang, Jian Sun, Wenfu Chen. Analysis of Texture Factors and Genetic Basis Influencing the Differences in Eating Quality between Northeast China and Japanese Japonica Rice [J]. Chinese Bulletin of Botany, 2025, 60(4): 1-0.
[3]	Chuanyong Wang, Dian Zhuang, Zhengda Song, Henghua Zhai, Naiwei Li, Fan Zhang. Structural and Comparative Analysis of the Complete Chloroplast Genome and Phylogenetic Inference of the Aronia melanocarpa [J]. Chinese Bulletin of Botany, 2025, 60(4): 1-0.
[4]	Zhang Ruli, Li Dezhu, Zhang Yuxiao. Population Genetic Structure and Climate Adaptation Analysis of Brachystachyum densiflorum [J]. Chinese Bulletin of Botany, 2025, 60(3): 407-424.
[5]	Zhigang Yang, Pengcheng Zhang, Haiwen Chang, Liru Kang, Yi Zuo, Haoxin Xiang, Fengying Han. Genetic Diversity Analysis of Pepper Germplasms Based on Morphological Traits and SSR Markers [J]. Chinese Bulletin of Botany, 2025, 60(2): 218-234.
[6]	Lin Zhen, Xiang Jiabao, Cai Hejiayi, Gao Bei, Yang Jintao, Li Junyi, Zhou Qingsong, Huang Xiaolei, Deng Jun. Mitochondrial genomic data for seven Hemipteran species [J]. Biodiv Sci, 2025, 33(2): 24434-.
[7]	Linfeng Xia, Rui Li, Haizheng Wang, Daling Feng, Chunyang Wang. Research Advances and Prospects in Charophytes Genomics [J]. Chinese Bulletin of Botany, 2025, 60(2): 271-282.
[8]	Cao Dong, Li Huanlong, Peng Yang, Wei Cunzheng. Progresses in the study of the relationship between plant genome size and traits [J]. Biodiv Sci, 2025, 33(2): 24192-.
[9]	Jiachen Wang, Tangjun Xu, Wei Xu, Gaoji Zhang, Yijin You, Honghua Ruan, Hongyi Liu. Impact of urban landscape pattern on the genetic structure of Thereuopoda clunifera population in Nanjing, China [J]. Biodiv Sci, 2025, 33(1): 24251-.
[10]	Hong Deng, Zhanyou Zhong, Chunni Kou, Shuli Zhu, Yuefei Li, Yuguo Xia, Zhi Wu, Jie Li, Weitao Chen. Population genetic structure and evolutionary history of Hemibagrus guttatus based on mitochondrial genomes [J]. Biodiv Sci, 2025, 33(1): 24241-.
[11]	Xiangtan Yao, Xinyi Zhang, Yang Chen, Ye Yuan, Wangda Cheng, Tianrui Wang, Yingxiong Qiu. Genomic resequencing reveals the genetic diversity of the cultivated water caltrop, and the origin and domestication of ‘Nanhuling’ [J]. Biodiv Sci, 2024, 32(9): 24212-.
[12]	Qiang Zhang, Zhenyu Zhao, Pinghua Li. Research Progress of Gene Editing Technology in Maize [J]. Chinese Bulletin of Botany, 2024, 59(6): 978-998.
[13]	Suowei Wu, Xueli An, Xiangyuan Wan. Molecular Mechanisms of Male Sterility and their Applications in Biotechnology-based Male-sterility Hybrid Seed Production in Maize [J]. Chinese Bulletin of Botany, 2024, 59(6): 932-949.
[14]	Yuan Li, Kaijian Fan, Tai An, Cong Li, Junxia Jiang, Hao Niu, Weiwei Zeng, Yanfang Heng, Hu Li, Junjie Fu, Huihui Li, Liang Li. Study on Multi-environment Genome-wide Prediction of Inbred Agronomic Traits in Maize Natural Populations [J]. Chinese Bulletin of Botany, 2024, 59(6): 1041-1053.
[15]	Kexin Cao, Jingwen Wang, Guo Zheng, Pengfeng Wu, Yingbin Li, Shuyan Cui. Effects of precipitation regime change and nitrogen deposition on soil nematode diversity in the grassland of northern China [J]. Biodiv Sci, 2024, 32(3): 23491-.

Chinese Scientist Generated High-quality Genome Sequences for indica Rice^*

RichHTML

PDF (PC)

Knowledge

Abstract

Cite this article

share this article

References 5

Related Articles 15

Recommended Articles

Metrics

Comments