Chinese Bulletin of Botany ›› 2020, Vol. 55 ›› Issue (6): 768-776.DOI: 10.11983/CBB20098
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Yijun Wang1,2,*(), Yali Wang1,2, Yudong Chen1,2
Received:
2020-05-26
Accepted:
2020-09-03
Online:
2020-11-01
Published:
2020-11-11
Contact:
Yijun Wang
Yijun Wang, Yali Wang, Yudong Chen. Transposon-derived Long Noncoding RNA in Plants[J]. Chinese Bulletin of Botany, 2020, 55(6): 768-776.
Figure 1 Transposon composition in the genomes of Arabidopsis and maize (data source: The Arabidopsis Genome Initiative, 2000; Schnable et al., 2009) (A) Transposon composition in Arabidopsis genome (left) and the proportion of Arabidopsis long terminal repeat (LTR) retrotransposons (right); (B) Transposon composition in maize genome (left) and the proportion of maize LTR retrotransposons (right). Class I: Retrotransposons; Class II: DNA trotransposons
物种 | lncRNA ID | lncRNA调控通路 | 参考文献 |
---|---|---|---|
拟南芥 | COLDAIR (COLD ASSISTED INTRONIC NONCODING RNA) | 成花转变 | |
COOLAIR (cold induced long antisense intragenic RNA) | 成花转变 | ||
DRIR (DROUGHT INDUCED lncRNA) | 干旱和盐胁迫应答 | ||
ELENA1 (ELF18-INDUCED LONG-NONCODING RNA1) | 先天免疫反应 | ||
MAS (lncRNA from MADS AFFECTING FLOWERING4) | 春化响应 | ||
T5120 | NO3-同化 | ||
TE-lincRNA11195* | ABA响应 | ||
水稻 | ALEX1 (An Leaf Expressed and Xoo-induced lncRNA 1) | 白叶枯病抗性 | |
Ef-cd (Early flowering-completely dominant) | 开花期和产量 | ||
LAIR (LRK Antisense Intergenic RNA) | 产量 | ||
TL (TWISTED LEAF) | 叶片发育 | ||
玉米 | PILNCR1 (Pi-deficiency-induced long non-coding RNA 1) | 磷胁迫应答 | |
棉花 | XLOC_409583* | 苗高 | |
番茄 | lncRNA-314* | 果实成熟 | |
lncRNA16397 | 晚疫病抗性 | ||
lncRNA39026 | 晚疫病抗性 |
Table 1 Function of plant long noncoding RNA (lncRNA)
物种 | lncRNA ID | lncRNA调控通路 | 参考文献 |
---|---|---|---|
拟南芥 | COLDAIR (COLD ASSISTED INTRONIC NONCODING RNA) | 成花转变 | |
COOLAIR (cold induced long antisense intragenic RNA) | 成花转变 | ||
DRIR (DROUGHT INDUCED lncRNA) | 干旱和盐胁迫应答 | ||
ELENA1 (ELF18-INDUCED LONG-NONCODING RNA1) | 先天免疫反应 | ||
MAS (lncRNA from MADS AFFECTING FLOWERING4) | 春化响应 | ||
T5120 | NO3-同化 | ||
TE-lincRNA11195* | ABA响应 | ||
水稻 | ALEX1 (An Leaf Expressed and Xoo-induced lncRNA 1) | 白叶枯病抗性 | |
Ef-cd (Early flowering-completely dominant) | 开花期和产量 | ||
LAIR (LRK Antisense Intergenic RNA) | 产量 | ||
TL (TWISTED LEAF) | 叶片发育 | ||
玉米 | PILNCR1 (Pi-deficiency-induced long non-coding RNA 1) | 磷胁迫应答 | |
棉花 | XLOC_409583* | 苗高 | |
番茄 | lncRNA-314* | 果实成熟 | |
lncRNA16397 | 晚疫病抗性 | ||
lncRNA39026 | 晚疫病抗性 |
Figure 2 The proportion of plant transposable element-de- rived long intergenic noncoding RNA (TE-lincRNA) (data source: Wang et al., 2017; Golicz et al., 2018)
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