Transposon-derived Long Noncoding RNA in Plants

doi:10.11983/CBB20098

Abstract

Abstract: Transposable element (TE), core component of the genome, influences genome structure and stability. Long noncoding RNA (lncRNA) modulates diverse biological events at transcriptional and post-transcriptional levels. TE and lncRNA are major driving forces of evolution. Emerging evidence has revealed the wide distribution of lncRNA that harbors TE. In this review, we first briefly introduce the methodologies of identification and functional analysis of plant lncRNA. We focus on the distribution and function of transposable element-derived lncRNA (TE-lncRNA). Finally, we discuss the regulatory mechanism, epigenetic modification, and breeding potential of TE-lncRNA in plants.

Key words: transposable element, long noncoding RNA, transposon-derived lncRNA, plant

Yijun Wang, Yali Wang, Yudong Chen. Transposon-derived Long Noncoding RNA in Plants[J]. Chinese Bulletin of Botany, 2020, 55(6): 768-776.

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URL: https://www.chinbullbotany.com/EN/10.11983/CBB20098

https://www.chinbullbotany.com/EN/Y2020/V55/I6/768

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References 49

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物种	lncRNA ID	lncRNA调控通路	参考文献
拟南芥	COLDAIR (COLD ASSISTED INTRONIC NONCODING RNA)	成花转变	Heo and Sung, 2011
	COOLAIR (cold induced long antisense intragenic RNA)	成花转变	Swiezewski et al., 2009
	DRIR (DROUGHT INDUCED lncRNA)	干旱和盐胁迫应答	Qin et al., 2017
	ELENA1 (ELF18-INDUCED LONG-NONCODING RNA1)	先天免疫反应	Seo et al., 2017
	MAS (lncRNA from MADS AFFECTING FLOWERING4)	春化响应	Zhao et al., 2018b
	T5120	NO₃^-同化	Liu et al., 2019
	TE-lincRNA11195*	ABA响应	Wang et al., 2017
水稻	ALEX1 (An Leaf Expressed and Xoo-induced lncRNA 1)	白叶枯病抗性	Yu et al., 2020
	Ef-cd (Early flowering-completely dominant)	开花期和产量	Fang et al., 2019
	LAIR (LRK Antisense Intergenic RNA)	产量	Wang et al., 2018a
	TL (TWISTED LEAF)	叶片发育	Liu et al., 2018
玉米	PILNCR1 (Pi-deficiency-induced long non-coding RNA 1)	磷胁迫应答	Du et al., 2018
棉花	XLOC_409583*	苗高	Zhao et al., 2018a
番茄	lncRNA-314*	果实成熟	Wang et al., 2016
	lncRNA16397	晚疫病抗性	Cui et al., 2017
	lncRNA39026	晚疫病抗性	Hou et al., 2020

物种	lncRNA ID	lncRNA调控通路	参考文献
拟南芥	COLDAIR (COLD ASSISTED INTRONIC NONCODING RNA)	成花转变	Heo and Sung, 2011
	COOLAIR (cold induced long antisense intragenic RNA)	成花转变	Swiezewski et al., 2009
	DRIR (DROUGHT INDUCED lncRNA)	干旱和盐胁迫应答	Qin et al., 2017
	ELENA1 (ELF18-INDUCED LONG-NONCODING RNA1)	先天免疫反应	Seo et al., 2017
	MAS (lncRNA from MADS AFFECTING FLOWERING4)	春化响应	Zhao et al., 2018b
	T5120	NO₃^-同化	Liu et al., 2019
	TE-lincRNA11195*	ABA响应	Wang et al., 2017
水稻	ALEX1 (An Leaf Expressed and Xoo-induced lncRNA 1)	白叶枯病抗性	Yu et al., 2020
	Ef-cd (Early flowering-completely dominant)	开花期和产量	Fang et al., 2019
	LAIR (LRK Antisense Intergenic RNA)	产量	Wang et al., 2018a
	TL (TWISTED LEAF)	叶片发育	Liu et al., 2018
玉米	PILNCR1 (Pi-deficiency-induced long non-coding RNA 1)	磷胁迫应答	Du et al., 2018
棉花	XLOC_409583*	苗高	Zhao et al., 2018a
番茄	lncRNA-314*	果实成熟	Wang et al., 2016
	lncRNA16397	晚疫病抗性	Cui et al., 2017
	lncRNA39026	晚疫病抗性	Hou et al., 2020