Chinese Bulletin of Botany ›› 2020, Vol. 55 ›› Issue (2): 147-162.DOI: 10.11983/CBB19103
• EXPERIMENTAL COMMUNICATIONS • Previous Articles Next Articles
Zeyuan Zuo,Wanlin Liu,Jie Xu()
Received:
2019-05-30
Accepted:
2019-09-19
Online:
2020-03-01
Published:
2020-02-12
Contact:
Jie Xu
Zeyuan Zuo,Wanlin Liu,Jie Xu. Evolution and Functional Analysis of Gene Clusters in Anther Tapetum Cells of Arabidopsis thaliana[J]. Chinese Bulletin of Botany, 2020, 55(2): 147-162.
Cluster No. | AGI | MW (kDa) | PI | Location | TM | Description |
---|---|---|---|---|---|---|
1 | AT1G12060 | 24786.8 | 9.09 | Undefined | 0 | BCL-2-associated athanogene 5 |
1 | AT1G12064 | 11961.3 | 9.24 | Secreted | 1 | Unknown protein |
1 | AT1G12070 | 25456.4 | 4.52 | Other | 0 | Immunoglobulin E-set superfamily protein |
1 | AT1G12080 | 15381.7 | 3.74 | Undefined | 0 | Vacuolar calcium-binding protein-related |
1 | AT1G12090 | 13912.3 | 8.15 | Secreted | 0 | Extensin-like protein |
1 | AT1G12100 | 13909.2 | 6.90 | Secreted | 0 | Bifunctional inhibitor/lipid-transfer protein/seed storage |
1 | AT1G12110 | 64921.2 | 8.57 | Other | 11 | Nitrate transporter 1.1 |
2 | AT1G61560 | 67225.5 | 10.06 | Undefined | 8 | Seven transmembrane MLO family protein |
2 | AT1G61563 | 8906.4 | 9.93 | Secreted | 1 | Ralf-like 8 |
2 | AT1G61566 | 8259.6 | 9.93 | Secreted | 1 | Ralf-like 9 |
2 | AT1G61570 | 9411.6 | 5.03 | Undefined | 0 | Translocase of the inner mitochondrial membrane 13 |
2 | AT1G61575 | 5641.3 | 4.50 | Undefined | 0 | Unknown protein |
3 | AT1G74540 | 56740.6 | 8.36 | Undefined | 1 | Cytochrome P450, family 98 |
3 | AT1G74550 | 55418.9 | 8.88 | Undefined | 0 | Cytochrome P450, family 98 |
4 | AT1G75880 | 41333.3 | 8.23 | Secreted | 1 | SGNH hydrolase-type esterase |
4 | AT1G75890 | 42126.2 | 8.44 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75900 | 39815.4 | 5.47 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75910 | 37910.6 | 10.30 | Secreted | 0 | Extracellular lipase 4 |
4 | AT1G75920 | 39254.5 | 10.06 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75930 | 38595.7 | 9.89 | Secreted | 0 | Extracellular lipase 6 |
4 | AT1G75940 | 61674.7 | 6.04 | Secreted | 1 | Glycosyl hydrolase superfamily protein |
5 | AT2G47010 | 55049.8 | 6.50 | Secreted | 0 | Unknown protein |
5 | AT2G47020 | 46827.8 | 7.36 | Mitochondrion | 0 | Peptide chain release factor 1 |
5 | AT2G47030 | 64137.1 | 9.44 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47040 | 64727.7 | 9.32 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47050 | 23775.5 | 9.35 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47060 | 43753.3 | 7.67 | Other | 0 | Protein kinase superfamily protein |
6 | AT3G07810 | 52055.5 | 8.81 | Other | 0 | RNA-binding (RRM/RBD/RNP motifs) family protein |
6 | AT3G07820 | 41681.1 | 7.34 | Secreted | 1 | Pectin lyase-like superfamily protein |
6 | AT3G07830 | 42912.9 | 8.69 | Secreted | 0 | Pectin lyase-like superfamily protein |
6 | AT3G07840 | 42591.5 | 8.08 | Secreted | 0 | Pectin lyase-like superfamily protein |
6 | AT3G07850 | 45599.9 | 8.43 | Secreted | 1 | Pectin lyase-like superfamily protein |
6 | AT3G07860 | 18672.5 | 10.45 | Other | 0 | Ubiquitin-like superfamily protein |
7 | AT3G28730 | 71645.6 | 5.56 | Undefined | 0 | High mobility group |
7 | AT3G28740 | 57691.8 | 9.23 | Secreted | 1 | Cytochrome P450 superfamily protein |
7 | AT3G28750 | 35478.4 | 10.45 | Secreted | 0 | Unknown protein |
7 | AT3G28760 | 49598.7 | 6.72 | Undefined | 0 | Unknown protein |
7 | AT3G28770 | 232851.8 | 4.73 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28780 | 61329 | 3.92 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28790 | 62765.8 | 10.04 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28810 | 47872.2 | 9.70 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28820 | 47786 | 9.38 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28830 | 55500.6 | 10.42 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28840 | 36875.3 | 10.06 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28850 | 48178.4 | 4.72 | Undefined | 0 | Glutaredoxin family protein |
7 | AT3G28860 | 136786.9 | 8.37 | Other | 10 | ATP binding cassette subfamily B19 |
8 | AT4G29290 | 8554.9 | 6.92 | Secreted | 1 | Low-molecular-weight cysteine-rich 26 |
8 | AT4G29300 | 8510.8 | 4.40 | Secreted | 1 | Low-molecular-weight cysteine-rich 27 |
8 | AT4G29305 | 8359.7 | 7.91 | Secreted | 1 | Low-molecular-weight cysteine-rich 25 |
8 | AT4G29310 | 45655.6 | 9.63 | Undefined | 0 | Protein of unknown function (DUF1005) |
8 | AT4G29330 | 29213.2 | 10.33 | Other | 6 | DERLIN-1 |
8 | AT4G29340 | 14418.3 | 4.84 | Other | 0 | Profilin 4 |
8 | AT4G29350 | 13997.8 | 4.67 | Other | 0 | Profilin 2 |
9 | AT5G07410 | 39336.9 | 8.70 | Secreted | 1 | Pectin lyase-like superfamily protein |
9 | AT5G07420 | 39658 | 9.40 | Secreted | 0 | Pectin lyase-like superfamily protein |
9 | AT5G07430 | 39910.3 | 9.11 | Secreted | 0 | Pectin lyase-like superfamily protein |
9 | AT5G07440 | 44698.7 | 6.51 | Undefined | 0 | Glutamate dehydrogenase 2 |
9 | AT5G07450 | 25004.5 | 6.01 | Undefined | 0 | Cyclin p4;3 |
10 | AT5G07510 | 18462.4 | 12.43 | Secreted | 3 | Glycine-rich protein 14 |
10 | AT5G07520 | 21482.5 | 10.55 | Secreted | 3 | Glycine-rich protein 18 |
10 | AT5G07530 | 53192.9 | 11.13 | Undefined | 3 | Glycine rich protein 17 |
10 | AT5G07540 | 22300.1 | 10.85 | Secreted | 3 | Glycine-rich protein 16 |
10 | AT5G07550 | 10682.5 | 10.13 | Secreted | 2 | Glycine-rich protein 19 |
10 | AT5G07560 | 15458.3 | 11.20 | Other | 3 | Glycine-rich protein 20 |
10 | AT5G07570 | 148459.7 | 3.36 | Secreted | 10 | Glycine/proline-rich protein |
11 | AT5G17450 | 16995.5 | 10.18 | Undefined | 0 | Heavy metal transport/detoxification |
11 | AT5G17460 | 35918.8 | 8.34 | Undefined | 0 | Unknown protein |
11 | AT5G17470 | 16320.1 | 4.01 | Other | 0 | EF hand calcium-binding protein family |
11 | AT5G17480 | 9048 | 4.30 | Other | 0 | Pollen calcium-binding protein 1 |
11 | AT5G17490 | 57326.1 | 4.49 | Other | 0 | RGA-like protein 3 |
11 | AT5G17500 | 59551 | 8.19 | Secreted | 1 | Glycosyl hydrolase superfamily protein |
12 | AT5G53800 | 41786.3 | 10.38 | Other | 0 | Unknown protein |
12 | AT5G53810 | 41944.2 | 5.17 | Other | 0 | O-methyltransferase family protein |
12 | AT5G53820 | 7028.7 | 10.26 | Undefined | 0 | Late embryogenesis abundant protein (LEA) family protein |
12 | AT5G53830 | 26918.8 | 10.18 | Undefined | 0 | VQ motif-containing protein |
12 | AT5G53840 | 50906.6 | 7.31 | Other | 0 | F-box/RNI-like/FBD-like domains-containing pro- tein |
12 | AT5G53850 | 56520.1 | 6.14 | Undefined | 0 | Haloacid dehalogenase-like hydrolase family protein |
13 | AT5G67460 | 41995.4 | 8.16 | Secreted | 0 | O-glycosyl hydrolases family 17 protein |
13 | AT5G67470 | 98648.8 | 9.91 | Secreted | 2 | Formin homolog 6 |
13 | AT5G67480 | 43817.7 | 9.59 | Undefined | 0 | BTB and TAZ domain protein 4 |
13 | AT5G67490 | 11869.8 | 4.25 | Undefined | 0 | Unknown protein |
13 | AT5G67500 | 32904.9 | 7.68 | Other | 0 | Voltage dependent anion channel 2 |
13 | AT5G67510 | 16790.3 | 11.74 | Undefined | 0 | Translation protein SH3-like family protein |
13 | AT5G67520 | 34064.3 | 9.29 | Undefined | 0 | Adenosine-5'-phosphosulfate (APS) kinase 4 |
Table 1 Basic information of anther-specific expressed cluster genes during Arabidopsis anther development
Cluster No. | AGI | MW (kDa) | PI | Location | TM | Description |
---|---|---|---|---|---|---|
1 | AT1G12060 | 24786.8 | 9.09 | Undefined | 0 | BCL-2-associated athanogene 5 |
1 | AT1G12064 | 11961.3 | 9.24 | Secreted | 1 | Unknown protein |
1 | AT1G12070 | 25456.4 | 4.52 | Other | 0 | Immunoglobulin E-set superfamily protein |
1 | AT1G12080 | 15381.7 | 3.74 | Undefined | 0 | Vacuolar calcium-binding protein-related |
1 | AT1G12090 | 13912.3 | 8.15 | Secreted | 0 | Extensin-like protein |
1 | AT1G12100 | 13909.2 | 6.90 | Secreted | 0 | Bifunctional inhibitor/lipid-transfer protein/seed storage |
1 | AT1G12110 | 64921.2 | 8.57 | Other | 11 | Nitrate transporter 1.1 |
2 | AT1G61560 | 67225.5 | 10.06 | Undefined | 8 | Seven transmembrane MLO family protein |
2 | AT1G61563 | 8906.4 | 9.93 | Secreted | 1 | Ralf-like 8 |
2 | AT1G61566 | 8259.6 | 9.93 | Secreted | 1 | Ralf-like 9 |
2 | AT1G61570 | 9411.6 | 5.03 | Undefined | 0 | Translocase of the inner mitochondrial membrane 13 |
2 | AT1G61575 | 5641.3 | 4.50 | Undefined | 0 | Unknown protein |
3 | AT1G74540 | 56740.6 | 8.36 | Undefined | 1 | Cytochrome P450, family 98 |
3 | AT1G74550 | 55418.9 | 8.88 | Undefined | 0 | Cytochrome P450, family 98 |
4 | AT1G75880 | 41333.3 | 8.23 | Secreted | 1 | SGNH hydrolase-type esterase |
4 | AT1G75890 | 42126.2 | 8.44 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75900 | 39815.4 | 5.47 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75910 | 37910.6 | 10.30 | Secreted | 0 | Extracellular lipase 4 |
4 | AT1G75920 | 39254.5 | 10.06 | Secreted | 0 | GDSL-like lipase/Acylhydrolase |
4 | AT1G75930 | 38595.7 | 9.89 | Secreted | 0 | Extracellular lipase 6 |
4 | AT1G75940 | 61674.7 | 6.04 | Secreted | 1 | Glycosyl hydrolase superfamily protein |
5 | AT2G47010 | 55049.8 | 6.50 | Secreted | 0 | Unknown protein |
5 | AT2G47020 | 46827.8 | 7.36 | Mitochondrion | 0 | Peptide chain release factor 1 |
5 | AT2G47030 | 64137.1 | 9.44 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47040 | 64727.7 | 9.32 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47050 | 23775.5 | 9.35 | Secreted | 1 | Plant invertase/pectin methylesterase inhibitor superfamily protein |
5 | AT2G47060 | 43753.3 | 7.67 | Other | 0 | Protein kinase superfamily protein |
6 | AT3G07810 | 52055.5 | 8.81 | Other | 0 | RNA-binding (RRM/RBD/RNP motifs) family protein |
6 | AT3G07820 | 41681.1 | 7.34 | Secreted | 1 | Pectin lyase-like superfamily protein |
6 | AT3G07830 | 42912.9 | 8.69 | Secreted | 0 | Pectin lyase-like superfamily protein |
6 | AT3G07840 | 42591.5 | 8.08 | Secreted | 0 | Pectin lyase-like superfamily protein |
6 | AT3G07850 | 45599.9 | 8.43 | Secreted | 1 | Pectin lyase-like superfamily protein |
6 | AT3G07860 | 18672.5 | 10.45 | Other | 0 | Ubiquitin-like superfamily protein |
7 | AT3G28730 | 71645.6 | 5.56 | Undefined | 0 | High mobility group |
7 | AT3G28740 | 57691.8 | 9.23 | Secreted | 1 | Cytochrome P450 superfamily protein |
7 | AT3G28750 | 35478.4 | 10.45 | Secreted | 0 | Unknown protein |
7 | AT3G28760 | 49598.7 | 6.72 | Undefined | 0 | Unknown protein |
7 | AT3G28770 | 232851.8 | 4.73 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28780 | 61329 | 3.92 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28790 | 62765.8 | 10.04 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28810 | 47872.2 | 9.70 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28820 | 47786 | 9.38 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28830 | 55500.6 | 10.42 | Secreted | 1 | Protein of unknown function (DUF1216) |
7 | AT3G28840 | 36875.3 | 10.06 | Secreted | 0 | Protein of unknown function (DUF1216) |
7 | AT3G28850 | 48178.4 | 4.72 | Undefined | 0 | Glutaredoxin family protein |
7 | AT3G28860 | 136786.9 | 8.37 | Other | 10 | ATP binding cassette subfamily B19 |
8 | AT4G29290 | 8554.9 | 6.92 | Secreted | 1 | Low-molecular-weight cysteine-rich 26 |
8 | AT4G29300 | 8510.8 | 4.40 | Secreted | 1 | Low-molecular-weight cysteine-rich 27 |
8 | AT4G29305 | 8359.7 | 7.91 | Secreted | 1 | Low-molecular-weight cysteine-rich 25 |
8 | AT4G29310 | 45655.6 | 9.63 | Undefined | 0 | Protein of unknown function (DUF1005) |
8 | AT4G29330 | 29213.2 | 10.33 | Other | 6 | DERLIN-1 |
8 | AT4G29340 | 14418.3 | 4.84 | Other | 0 | Profilin 4 |
8 | AT4G29350 | 13997.8 | 4.67 | Other | 0 | Profilin 2 |
9 | AT5G07410 | 39336.9 | 8.70 | Secreted | 1 | Pectin lyase-like superfamily protein |
9 | AT5G07420 | 39658 | 9.40 | Secreted | 0 | Pectin lyase-like superfamily protein |
9 | AT5G07430 | 39910.3 | 9.11 | Secreted | 0 | Pectin lyase-like superfamily protein |
9 | AT5G07440 | 44698.7 | 6.51 | Undefined | 0 | Glutamate dehydrogenase 2 |
9 | AT5G07450 | 25004.5 | 6.01 | Undefined | 0 | Cyclin p4;3 |
10 | AT5G07510 | 18462.4 | 12.43 | Secreted | 3 | Glycine-rich protein 14 |
10 | AT5G07520 | 21482.5 | 10.55 | Secreted | 3 | Glycine-rich protein 18 |
10 | AT5G07530 | 53192.9 | 11.13 | Undefined | 3 | Glycine rich protein 17 |
10 | AT5G07540 | 22300.1 | 10.85 | Secreted | 3 | Glycine-rich protein 16 |
10 | AT5G07550 | 10682.5 | 10.13 | Secreted | 2 | Glycine-rich protein 19 |
10 | AT5G07560 | 15458.3 | 11.20 | Other | 3 | Glycine-rich protein 20 |
10 | AT5G07570 | 148459.7 | 3.36 | Secreted | 10 | Glycine/proline-rich protein |
11 | AT5G17450 | 16995.5 | 10.18 | Undefined | 0 | Heavy metal transport/detoxification |
11 | AT5G17460 | 35918.8 | 8.34 | Undefined | 0 | Unknown protein |
11 | AT5G17470 | 16320.1 | 4.01 | Other | 0 | EF hand calcium-binding protein family |
11 | AT5G17480 | 9048 | 4.30 | Other | 0 | Pollen calcium-binding protein 1 |
11 | AT5G17490 | 57326.1 | 4.49 | Other | 0 | RGA-like protein 3 |
11 | AT5G17500 | 59551 | 8.19 | Secreted | 1 | Glycosyl hydrolase superfamily protein |
12 | AT5G53800 | 41786.3 | 10.38 | Other | 0 | Unknown protein |
12 | AT5G53810 | 41944.2 | 5.17 | Other | 0 | O-methyltransferase family protein |
12 | AT5G53820 | 7028.7 | 10.26 | Undefined | 0 | Late embryogenesis abundant protein (LEA) family protein |
12 | AT5G53830 | 26918.8 | 10.18 | Undefined | 0 | VQ motif-containing protein |
12 | AT5G53840 | 50906.6 | 7.31 | Other | 0 | F-box/RNI-like/FBD-like domains-containing pro- tein |
12 | AT5G53850 | 56520.1 | 6.14 | Undefined | 0 | Haloacid dehalogenase-like hydrolase family protein |
13 | AT5G67460 | 41995.4 | 8.16 | Secreted | 0 | O-glycosyl hydrolases family 17 protein |
13 | AT5G67470 | 98648.8 | 9.91 | Secreted | 2 | Formin homolog 6 |
13 | AT5G67480 | 43817.7 | 9.59 | Undefined | 0 | BTB and TAZ domain protein 4 |
13 | AT5G67490 | 11869.8 | 4.25 | Undefined | 0 | Unknown protein |
13 | AT5G67500 | 32904.9 | 7.68 | Other | 0 | Voltage dependent anion channel 2 |
13 | AT5G67510 | 16790.3 | 11.74 | Undefined | 0 | Translation protein SH3-like family protein |
13 | AT5G67520 | 34064.3 | 9.29 | Undefined | 0 | Adenosine-5'-phosphosulfate (APS) kinase 4 |
Figure 2 Chromosome distribution of anther-specific expressed 84 candidate genes during Arabidopsis anther development (A) Distribution of candidate genes on 1-5 chromosome (Numbers represent which cluster genes belong to); (B) Number and proportion of candidate genes distributed on chromosome
Figure 3 Gene structure and transcriptional direction of anther-specific expressed clustered genes during Arabidopsis anther development (A) Gene structure of Ralf-like family gene cluster; (B) Gene structure of pectin lyase-like family gene cluster; (C) Gene structure of AT1G12060-AT1G12110 gene cluster. Dotted line with white square: untranslated region and unknown protein; Black side with grey square: exon; Interval between exons: intron; Black arrow below: transcription direction and gene annotations. Size of gene is approximately proportional to the actual size.
Figure 4 Expression-pattern analysis of anther-specific expressed candidate genes during Arabidopsis anther development (A) Clustered expression heatmap, containing tissues such as root, seed, leaf, stem, hypocotyl, meristem, stigma, ovary, embryo, flower, pollen tube, and pollen; (B) Co-expression network
Figure 5 Phylogenetic trees of anther-specific expressed candidate genes during Arabidopsis anther development (A) Phylogenetic tree of candidate genes, the colored gene ID in phylogenetic tree represents 24 primarily screened specific high-expression genes, outside color strips represent 13 clusters, with 84 screened genes, and genes under the same color belonging to same cluster; (B) Phylogenetic tree of gene cluster 1, numbers on branches represent bootstrap validation.
Figure 6 Phylostratigraphic profiles of Arabidopsis genes (A) Phylostratigraphic map of Arabidopsis, include prokaryotes, eukaryotes, green plants, embryo plants, angiosperm and rosids; (B) Distribution and proportion of candidate genes in Phylostratum 1-13
Figure 7 Gene duplication events in Arabidopsis (A) Gene duplication events of candidate genes; (B) Gene duplication events in Arabidopsis genome. Proximal: Proximal duplication event; Dispersed: Dispersed duplication event; Singleton: No duplication event; Tandem: Tandem duplication event; WGD or segmental: Whole genome duplication or segmental duplication event
Phylostratum | WGD | Tandem | Proximal | Dispersed | Singleton |
---|---|---|---|---|---|
PS13 | 0 | 0 | 0 | 0 | 0 |
PS12 | 0 | 0 | 0 | 0 | 0 |
PS11 | 4 (21.05%) | 13 (32.50%) | 0 | 1 (5.00%) | 0 |
PS10 | 4 (21.05%) | 2 (5.00%) | 0 | 1 (5.00%) | 1 (25.00%) |
PS9 | 7 (36.84%) | 15 (37.50%) | 0 | 11 (55.00%) | 2 (50.00%) |
PS8 | 0 | 1 (2.50%) | 0 | 0 | 0 |
PS7 | 1 (5.26%) | 0 | 0 | 1 (5.00%) | 0 |
PS6 | 0 | 0 | 0 | 0 | 0 |
PS5 | 0 | 0 | 0 | 0 | 0 |
PS4 | 0 | 0 | 0 | 0 | 0 |
PS3 | 0 | 0 | 0 | 0 | 0 |
PS2 | 3 (15.79%) | 7 (17.50%) | 0 | 6 (30.00%) | 0 |
PS1 | 0 | 2 (5.00%) | 1 (100%) | 0 | 1 (25.00%) |
Table 2 Relationships between phylostratum and gene duplication events in Arabidopsis
Phylostratum | WGD | Tandem | Proximal | Dispersed | Singleton |
---|---|---|---|---|---|
PS13 | 0 | 0 | 0 | 0 | 0 |
PS12 | 0 | 0 | 0 | 0 | 0 |
PS11 | 4 (21.05%) | 13 (32.50%) | 0 | 1 (5.00%) | 0 |
PS10 | 4 (21.05%) | 2 (5.00%) | 0 | 1 (5.00%) | 1 (25.00%) |
PS9 | 7 (36.84%) | 15 (37.50%) | 0 | 11 (55.00%) | 2 (50.00%) |
PS8 | 0 | 1 (2.50%) | 0 | 0 | 0 |
PS7 | 1 (5.26%) | 0 | 0 | 1 (5.00%) | 0 |
PS6 | 0 | 0 | 0 | 0 | 0 |
PS5 | 0 | 0 | 0 | 0 | 0 |
PS4 | 0 | 0 | 0 | 0 | 0 |
PS3 | 0 | 0 | 0 | 0 | 0 |
PS2 | 3 (15.79%) | 7 (17.50%) | 0 | 6 (30.00%) | 0 |
PS1 | 0 | 2 (5.00%) | 1 (100%) | 0 | 1 (25.00%) |
Figure 8 Distribution of gene clusters and tandem duplication relationships of anther-specific expressed candidate genes in Arabidopsis anther development Chr.1-5 represents 1-5 chromosome. Black links represent they have tandem duplication relationships.
Figure 9 Gene ontology (GO) enrichment analysis of anther-specific expressed candidate genes during Arabidopsis anther development (A) GO biological process enrichment analysis; (B) GO cellular component enrichment analysis (Figures (A) and (B) y-axis represents annotations of GO terms, number in parenthesis represents GO enrichment fold and x-axis represents minus logarithm of P value); (C) Subsequent analysis of GO cellular components (y-axis represents number of genes in a GO term in candidate genes to number of genes in a GO term in Arabidopsis genome and x-axis represents annotation of GO terms)
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