植物学报 ›› 2008, Vol. 25 ›› Issue (06): 695-700.

• 实验简报 • 上一篇    下一篇

超级杂交水稻 TIR1 类似基因 cDNA 的克隆与生物信息学分析

黄志刚, 胡皝, 赵玄之, 王若仲, 萧浪涛*   

  1. 湖南农业大学植物激素与生长发育湖南省重点实验室, 长沙 410128
  • 收稿日期:2008-04-21 修回日期:2008-06-25 出版日期:2008-11-01 发布日期:2010-10-18
  • 通讯作者: 萧浪涛

Cloning and Bioinformatics Analysis of TIR1 cDNA from Super Hybrid Rice Parental Line 1S

Zhigang Huang, Huang Hu, Xuanzhi Zhao, Ruozhong Wang, Langtao Xiao *   

  1. Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University,Changsha 410128, China
  • Received:2008-04-21 Revised:2008-06-25 Online:2008-11-01 Published:2010-10-18
  • Contact: Langtao Xiao

摘要: 生长素受体TIR1通过形成SCFTIR1复合体与生长素直接结合, 即为Aux/IAA在26S 蛋白酶体降解过程中的关键蛋白质。在Blas t检索和生物信息学分析的基础上设计特异引物, 以超级杂交水稻(Oryz a sativa)亲本株1S为材料, 通过RT-PCR扩增并经T-A克隆后测序, 获得一条长度为2 219 bp 的序列, 其开放阅读框长度为1 764 bp, 编码含587个氨基酸残基的肽链。该序列经生物信息学分析发现, 其与拟南芥TIR1相似性为77%, 同样具有2个保守的结构域, 即F-box和亮氨酸富集重复区域(LRR),且都不具有跨膜结构域和信号肽。该cDNA序列命名为OsTIR1。

Abstract: The auxin receptor TIR1, which can directly bind to auxin through the formation of the SCFTIR1 complex , is the key protein in the Aux /IAA degradation pathway of the 26S proteasome. In this research, we designed a specific primer according to the results of a BLAST search of bioinformatics data; the super hybrid rice parental line 1S was used as the plant material. After RT-PCR and T-A cloning, a 2 219 bp cDNA sequence was obtained through sequencing. Its open reading frame (ORF) was 1 764 bp long and coded for a polypeptide of 587 amino acids. Bioinformatics analysis revealed that the polypeptide shares 77% similarity with AtTIR1. Both polypeptides contain an F-box motif and a leucine-rich repeat domain but no transmembrane helices or signal peptide. The cDNA sequence was designated as OsTIR1 and submitted to GenBank.