Chinese Bulletin of Botany ›› 2019, Vol. 54 ›› Issue (2): 194-207.DOI: 10.11983/CBB18184
Special Issue: 逆境生物学专辑 (2019年54卷2期)
• EXPERIMENTAL COMMUNICATIONS • Previous Articles Next Articles
Lin Chen,Yan Lin,Pengfei Chen,Shaohua Wang,Yanfeng Ding(
)
HomeReceived:2018-08-28
Accepted:2019-01-11
Online:2019-03-10
Published:2019-09-01
Contact:
Yanfeng Ding
Lin Chen,Yan Lin,Pengfei Chen,Shaohua Wang,Yanfeng Ding. Effect of Iron Deficiency on the Protein Profile of Rice (Oryza sativa) Phloem Sap[J]. Chinese Bulletin of Botany, 2019, 54(2): 194-207.
Figure 1 Functional classification of the differentially expressed proteins of rice phloem sap via the Gene Ontology (GO) database
| Gene ID | Protein name | Unique peptides | FC (-Fe/+Fe) | P value |
|---|---|---|---|---|
| Plant hormone signal transduction | ||||
| 4332374 | Probable protein phosphatase 2C 30 | 1 | 0.81 | 0.01 |
| 4333666 | Regulatory protein NPR3 isoform X2 | 1 | 1.45 | 0.01 |
| 4337780 | Probable indole-3-acetic acid-amido synthetase GH3.6 | 1 | 0.83 | 0.03 |
| 4340712 | Gibberellin-regulated protein 5 | 1 | 1.22 | 0.00 |
| Carbon metabolism | ||||
| 9268154 | Malate synthase | 12 | 0.77 | 0.03 |
| 4349723 | Phosphoglycerate mutase-like protein 4 | 2 | 0.75 | 0.01 |
| 4345814 | Alpha-amylase isozyme 3D | 14 | 0.72 | 0.00 |
| Stress and defense | ||||
| 4332474 | L-ascorbate peroxidase 1, cytosolic | 10 | 0.64 | 0.00 |
| 4336627 | Probable phospholipid hydroperoxide glutathione peroxidase | 2 | 0.75 | 0.00 |
| 4330235 | Probable phospholipid hydroperoxide glutathione peroxidase | 2 | 0.82 | 0.00 |
| 4349585 | Cationic peroxidase 1 | 2 | 0.52 | 0.00 |
| 4347962 | Peroxidase A2 isoform X2 | 8 | 0.80 | 0.00 |
| 4337232 | Peroxidase 4 | 2 | 0.68 | 0.02 |
| 4332928 | Peroxidase 2 | 1 | 0.58 | 0.00 |
| 4332175 | Peroxidase A2 | 2 | 0.76 | 0.01 |
| 4344277 | Peroxidase 2-like | 5 | 0.82 | 0.00 |
| 4328425 | 4-hydroxyphenylpyruvate dioxygenase | 5 | 0.82 | 0.02 |
| Biosynthesis of amino acids | ||||
| 4342571 | Tryptophan synthase alpha chain | 1 | 0.79 | 0.05 |
| Ribosome | ||||
| 4325555 | 50S ribosomal protein L13, chloroplastic | 2 | 1.26 | 0.00 |
| 4324671 | 40S ribosomal protein S24-1 | 1 | 1.21 | 0.04 |
| 4334651 | 50S ribosomal protein L18, chloroplastic | 2 | 1.21 | 0.04 |
| 3131445 | Ribosomal protein S7 (plastid) | 2 | 1.21 | 0.00 |
| 4342697 | 40S ribosomal protein S15a-1 | 1 | 1.28 | 0.02 |
| 3131440 | Ribosomal protein S18 (plastid) | 1 | 0.74 | 0.01 |
| mRNA surveillance pathway | ||||
| 4347878 | Polyadenylation and cleavage factor homolog 4 | 2 | 0.77 | 0.01 |
| RNA transport | ||||
| 4329091 | Eukaryotic translation initiation factor 1A | 3 | 0.79 | 0.01 |
| 4345498 | ABC transporter A family member 7 | 1 | 1.40 | 0.00 |
Table 1 Differentially expressed proteins in phloem exudates of rice under iron deficiency in KEGG pathway
| Gene ID | Protein name | Unique peptides | FC (-Fe/+Fe) | P value |
|---|---|---|---|---|
| Plant hormone signal transduction | ||||
| 4332374 | Probable protein phosphatase 2C 30 | 1 | 0.81 | 0.01 |
| 4333666 | Regulatory protein NPR3 isoform X2 | 1 | 1.45 | 0.01 |
| 4337780 | Probable indole-3-acetic acid-amido synthetase GH3.6 | 1 | 0.83 | 0.03 |
| 4340712 | Gibberellin-regulated protein 5 | 1 | 1.22 | 0.00 |
| Carbon metabolism | ||||
| 9268154 | Malate synthase | 12 | 0.77 | 0.03 |
| 4349723 | Phosphoglycerate mutase-like protein 4 | 2 | 0.75 | 0.01 |
| 4345814 | Alpha-amylase isozyme 3D | 14 | 0.72 | 0.00 |
| Stress and defense | ||||
| 4332474 | L-ascorbate peroxidase 1, cytosolic | 10 | 0.64 | 0.00 |
| 4336627 | Probable phospholipid hydroperoxide glutathione peroxidase | 2 | 0.75 | 0.00 |
| 4330235 | Probable phospholipid hydroperoxide glutathione peroxidase | 2 | 0.82 | 0.00 |
| 4349585 | Cationic peroxidase 1 | 2 | 0.52 | 0.00 |
| 4347962 | Peroxidase A2 isoform X2 | 8 | 0.80 | 0.00 |
| 4337232 | Peroxidase 4 | 2 | 0.68 | 0.02 |
| 4332928 | Peroxidase 2 | 1 | 0.58 | 0.00 |
| 4332175 | Peroxidase A2 | 2 | 0.76 | 0.01 |
| 4344277 | Peroxidase 2-like | 5 | 0.82 | 0.00 |
| 4328425 | 4-hydroxyphenylpyruvate dioxygenase | 5 | 0.82 | 0.02 |
| Biosynthesis of amino acids | ||||
| 4342571 | Tryptophan synthase alpha chain | 1 | 0.79 | 0.05 |
| Ribosome | ||||
| 4325555 | 50S ribosomal protein L13, chloroplastic | 2 | 1.26 | 0.00 |
| 4324671 | 40S ribosomal protein S24-1 | 1 | 1.21 | 0.04 |
| 4334651 | 50S ribosomal protein L18, chloroplastic | 2 | 1.21 | 0.04 |
| 3131445 | Ribosomal protein S7 (plastid) | 2 | 1.21 | 0.00 |
| 4342697 | 40S ribosomal protein S15a-1 | 1 | 1.28 | 0.02 |
| 3131440 | Ribosomal protein S18 (plastid) | 1 | 0.74 | 0.01 |
| mRNA surveillance pathway | ||||
| 4347878 | Polyadenylation and cleavage factor homolog 4 | 2 | 0.77 | 0.01 |
| RNA transport | ||||
| 4329091 | Eukaryotic translation initiation factor 1A | 3 | 0.79 | 0.01 |
| 4345498 | ABC transporter A family member 7 | 1 | 1.40 | 0.00 |
Figure 2 Schematic representation of plant hormone signal transduction in phloem of rice under iron deficiencyRed represents an increase of protein expression abundance, and yellow represents a decrease. The solid lines indicate direct action and the dotted lines indicate omission process. The arrows mean a positive effect and the short vertical lines mean inhibited effect.
Figure 3 The hormone content in rice shoots (A) and roots (B) after three days of iron deficiency treatmentDifferent lowercase letters indicate significant differences between iron deficiency (-Fe) and the control (+Fe).
Figure 4 Metabolic pathways of carbon (A) and glutathione (B) related proteins in phloem exudates of rice under iron deficiencyYellow represents a decrease of protein expression abundance. The solid lines indicate direct action and the dotted lines indicate omission process. The arrows mean a positive effect.
Figure 5 The relative expression levels of OsIRT1, OsYSL15, OsNAS1 and OsNAS2 in root (A) and the relative expression levels of OsYSL2 and OsNAS1 in shoot (B) after three days of iron deficiency treatmentThe column diagram represents the relative gene expression level ratio of iron deficiency induced to the control.
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