[1]许晨璐,张守攻,孙晓梅.针叶树基因组资源及其在育种中的作用.[J].浙江农林大学学报,2012, 29: 768-777
[2]Ahuja MR,Neale DB (2005).Evolution of genome size in conifers. [J].Silvae Genet,2005,54:126-137
[3]Allona I,Quinn M,Shoop E,Swope K,Cyr SS,Carlis J,Riedl J,Retzel E,Campbell MM,Sederoff R,Whetten RW.Analysis of xylem formation in pine by cDNA sequencing[J].Proc Natl Acad Sci USA,1998,95:9693-9698
[4]Bautista R,Villalobos DP,Díaz-Moreno S,Cantón FR,Cánovas FM,Gonzalo Claros M.Toward a Pinus pinaster bacterial artificial chromosome library[J].Ann For Sci,2007,64:855-864
[5]Bennett MD,Leitch IJ,Price HJ,Johnston JS.Comparisons with Caenorhabditis (～100 Mb) and Drosophila (～175 Mb) using flow cytometry show genome size in Arabidopsis to be ～157 Mb and thus ～25% larger than the Arabidopsis genome initiative estimate of ～125 Mb[J].Annals of Botany,2003,91:547-557
[6]Buschizzo E,Ritland C,Bohlmann J,Ritland K .Slow but not low: genomic comparisons reveals slower evolutionary rate and higher dN/dS in conifers compared to angiosperms.[J].BMC Evol Biol,(2012),12:8.:-
[7]Chen J,Uebbing S,Gyllenstrand N,Lagercrantz U,Lascoux M,K?llman T .Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates,but similar selective constraints in gymnosperms and angiosperms. [J].BMC Genomics,(2012),13:589.:-
[8]Claros MG,Bautista R,Guerrero-Fernández D,Benzerki H,Seoane P,Fernández-Pozo N .Why assembling plant genome sequences is so challenging. [J].Biology,(2012),1:439-459
[9]Collins F .Has the revolution arrived? [J].Nature,(2010),464:674-675
[10]Cronn R,Knaus BJ,Dolan P,Denver D,Clair BS .Transcriptome dynamics of the dormancy-growth transition in Douglas-fir needles. [J].Plant and Animal Genome XXI Conference,San Diego,CA.,(2013),:-
[11]Cui L,Wall PK,Leebens-Mack JH,Lindsay BG,Soltis DE,Doyle JJ,Soltis S,Carlson JE,Arumuganathan K,Barakat A,Albert VA,Ma H,dePamphilis CW.Widespread genome duplications throughout the history of flowering plants. [J].Genome Res, (2006),16:738-749
[12]Delseny M,Han B,Hsing YI.High throughput DNA sequencing: The new sequencing revolution[J].Plant Sci,2010,179:407-422
[13]Díaz-Sala C,Cervera M .Promoting a functional and comparative understanding of the conifer genome- implementing applied aspects for more productive and adapted forests (ProCoGen). [J].BMC Proceedings,(2011),5,158.:-
[14]Dubos C,Plomion C.Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait[J].) roots. Plant Mol. Biol,2003,51:249-262
[15]Fernández-Pozo N,Canales J,Guerrero-Fernández D,Villalobos DP,Diaz-Moreno SM,Bautista R,Flores- Monterroso A,Guevara MA,Perdiguero P,Collada C,Cervera MT,Soto A,Ordas R,Canton FR,Avila C,Canovas FM,Claros MG (2011).EuroPineDB: a high-coverage web database for maritime pine transcriptome[J].BMC Genomics,2011,12:366-
[16]Friesen N,Brandes A,Heslop-Harrison JS.Diversity,origin,and distribution of retrotransposons (gypsy and copia) in conifers[J].Molecular Biology and Evolution,2001,18:1176-1188
[17]Futamura N,Totoki Y,Toyoda A,Igasaki T,Nanjo T,Seki M,Sakaki Y,Mari A,Shinozaki K,Shinohara K .Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili. [J].BMC Genomics,(2008),9: 383.:-
[18]Green ED .Strategies for the systematic sequencing of complex genomes. [J].Nat Rev Genet,(2001),2:573-583
[19]Guevara MA,Soto A,Collada C,Plomion C,Savolainen O,Neale DB,González-Martínez SC,Cervera MT .Genomics applied to the study of adaptation in pine species. [J].Invest Agrar: Sist Recur For,(2005),14:292-306
[20]Hamberger B,Hall D,Yuen M,Oddy C,Hamberger B,Keeling CI,Ritland C,Ritland K,Bohlmann J .Targeted isolation,sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome. [J].BMC Plant Biol,(2009),9:106.:-
[21]Hao DC,Ge G,Xiao P,Zhang Y,Yang L .The first insight into the t specific Taxus transcriptome via Illumina second generation sequencing. [J].,(2011),6: e21220:-
[22]Ingvarsson PK .A first look at the large and complex genome of Norway spruce (Picea abies). [J].Plant and Animal Genome XX Conference,San Diego,CA.,(2012),:-
[23]Jermstad KD,Eckert AJ,Wegrzyn JL,Kinloch BB,Mix AD,Davis DA,Burton DC,Neale DB.Comparative mapping in Pinus: Sugar pine (Pinus lambertiana Dougl) and Loblolly pine (Pinus taeda L[J].). Tree Genet. Genomes,2011,7:457-468
[24]Kinlaw CS,Neale DB .Complex gene families in pine genomes. [J].Trends in Plant Science,(1997),2:356-359
[25]Kirst M,Johnson AF,Baucom C,Ulrich E,Hubbard K,Staggs R,Paule C,Retzel E,Whetten R and Sederoff R.Apparent homology of expressed genes from wood-forming ts of loblolly pine (Pinus taeda,L[J].) with Arabidopsis thaliana. Proc Natl Acad Sci USA,2003,100:7383-7388
[26]Kovach A,Wegrzyn JL,Parra G,Holt C,Bruening GE,Loopstra CA,Hartigan J,Yandell M,Langley CH,Korf I,Neale DB .The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences[J].BMC Genomics, (2010),11:420.:-
[27]Kriebel HB .DNA-Sequence Components of the Pinus Strobus Nuclear Genome. [J].Can. J. For. Res.,(1985),15:1-4
[28]Krutovsky KV,Troggio M,Brown GR,Jermstad KD,Neale DB.Comparative mapping in the Pinaceae[J].Genetics,2004,168:447-461
[29]Li XG,Wu HX,Dillon SK Southerton SG .Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata,D. Don. [J].BMC Genomics,(2009),10,41.:-
[30]Lorenz WW,Neale DB,Jermstad KD,Howe GT,Rogers DL,Bordeaux JM,Ayyampalayam S,Dean JFD .Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for twelve diverse conifer species. [J].,(2012),:-
[31]Lorenz WW,Sun F,Liang C,Kolychev D,Wang H,Zhao X,Cordonnier-Pratt MM,Pratt LH,Dean JF .Water stress-responsive genes in loblolly pine (Pinus taeda) roots identified by analyses of expressed sequence tag libraries.[J].Tree Physiol,(2006),26:1-16
[32]Magbanua ZV,Ozkan S,Bartlett BD,Chouvarine P,Saski CA,Liston A,Cronn RC,Nelson CD,Peterson DG .Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. [J].PLoS One,(2011),6:e16214.:-
[33]Miller JR,Koren S,Sutton G.Assembly algorithms for next-generation sequencing data[J].Genomics,2010,95:315-327
[34]Morse AM,Peterson DG,Islam-Faridi MN,Smith KE,Magbanua Z,Garcia SA,Kubisiak TL,Amerson HV,Carloson JE,Nelson CD,Davis JM .Evolution of genome size and complexity in Pinus. [J].PLoS One,(2009),4:e4332.:-
[35]Müller T,Ensminger I,Schmid KJ .A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse,drought stressed seedlings. [J].BMC Genomics,(2012),13:673.:-
[36]Murray BG,Leitch IJ,Bennett MD .Gymnosperm DNA Cvalues database.[J].,(2004),:-
[37]Neale DB.Genomics to tree breeding and forest health[J].Curr. Opin. Genet. Dev,2007,17:539-544
[38]Ng SB,Turner EH,Robertson PD,Flygare SD,Bigham AW,Lee C,Shaffer T,Wong M,Bhattacharjee A,Eichler EE,Bamshad M,Nickerson DA,Shendure J.Targeted capture and massively parallel sequencing of 12 human exomes[J].Nature,2009,461:272-276
[39]Parchman TL,Geist KS,Grahnen JA,Benkman CW,Buerkle CA .Transcriptome sequencing in an ecologically important tree species: assembly,annotation,and marker discovery. [J].BMC Genomics,(2010),11,180.:-
[40]Pavy N,Paule C,Parsons L,Crow JA,Morency MJ,Cooke J,Johnson JE,Noumen E,Guillet-Claude C,Butterfield Y,Barber S,Yang G,Liu J,Stott J,Kirkpatrick R,Siddiqui A,Holt R,Marra M,Seguin A,Retzel E,Bousquet J,MacKay J .Generation,annotation,analysis and database integration of 16,500 white spruce EST clusters. [J].BMC Genomics,(2005),6,144.:-
[41]Pavy N,Pelgas B,Laroche J,Rigault P,Isabel N,Bouquet J .A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers. [J].BMC Biology,(2012),10:84.:-
[42]Peterson DG,Schulze SR,Sciara EB,Lee SA,Bowers JE,Nagel A,Jiang N,Tibbitts DC,Wessler SR,Paterson AH.Integration of Cot analysis,DNA cloning,and high-throughput sequencing facilitates genome characterization and gene discovery[J].Genome Res,2002,12:795-807
[43]Philippe R,Choulet F,Paux E,van Oeveren J,Tang J,Wittenberg AH,Janssen A,van Eijk MJ,Stormo K,Alberti A,Wincker P,Akhunov E,van der Vossen E,Feuillet C .Whole genome profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome. [J].BMC Genomics,(2012),13:47:-
[44]Ralph Sg,Chun HJ,Kolosova N,Cooper D,Oddy C,Ritland CE,Kirkpatrick R,Moore R,Barber S,Holt RA,Jones SJM,Marra MA,Douglas CJ,Ritland K,Bohlmann J .A conifer genomics resource of 200 000 spruce (Picea spp.) ESTs and 6,464 high-quality,sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis). [J].BMC Genomics,(2008),9,484.:-
[45]Rigault P,Boyle B,Lepage P,Cooke JEK,Bousquet J,MacKay JJ .A white spruce gene catalog for conifer genome analyses. [J].Plant Physiol.,(2011),157:14-28
[46]Rudd S .Expressed sequence tags: alternative or complement to whole genome sequences? [J].Trends in Plant Science,(2003),8:321-329
[47]Sarri V,Ceccarelli M,Cionini PG .Quantitative evolution of transposable and satellite DNA sequences in Picea species. [J].Genome,(2011),54:431-435
[48]Schatz M .De novo assembly of complex genomes using 3rd generation sequencing.[J].Plant and Animal Genome XX Conference,San Diego,CA.,(2012),:-
[49]Yeaman S,Hodgins K,Nurkowski K,Rieseberg L,Aitken SN .The genomics of adaptation to climate: de novo assembly and gene expression analysis of Interior Spruce and Lodgepole pine.[J].Plant and Animal Genome XXI Conference,San Diego,CA.,(2013),:-
[50]Zonneveld BJM .Conifer genome sizes of 172 species,covering 64 out of the 67 genera,range from 8 to 72 picogram.[J].Nordic J Bot,(2012),30:490-502
Home