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Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouche N, Gasciolli V, Vaucheret H (2006). DRB4-dependent TAS3 transacting siRNAs control leaf morphology through AGO7. Curr Biol 16, 927–932.
Adrian J, Farrona S, Reimer JJ, Albani MC, Coupland G, Turck F (2010). Cis-regulatory elements and chromatin state coordinately control temporal and spatial expression of FLOWERING LOCUST in Arabidopsis. Plant Cell 22, 1425–1440.
Ay N, Irmler K, Fischer A, Uhlemann R, Reuter G, Humbeck K (2009). Epigenetic programming via histone methylation at WRKY53 controls leaf senescence in Arabidopsis thaliana. Plant J 58, 333–346.
Balazadeh S, Riano-Pachon DM, Mueller-Roeber B (2008). Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol 10, 63–75.
Baurens F C,Nicolleau J,Legavre T (2004).Genomic DNA methylation of juveni|e and mature Acacia mangium micropropagated invitro with reference to leaf morphology as a phase change marker[J].Tree Physiol 24,401–407.
Benhamed M, Bertrand C, Servet C, Zhou DX (2006). Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 18, 2893–2903.
Berger SL (2007). The complex language of chromatin regulation during transcription. Nature 447, 407–412.
Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C (2011). High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 23, 873–894.
Brusslan JA, Alvarez-Canterbury AMR, Nair NU, Rice JC, Hitchler MJ, Pellegrini M (2012). Genome-wide evaluation of histone methylation changes associated with leaf senescence in Arabidopsis. PLoS ONE 7, e33151.
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ (2005). Comparative transcriptome analysis reveals significant differences in gene expression and signalingsignalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J 42, 567–585.
Chinnusamy V, Gong Z, Zhu JK (2008). Abscisic acid-mediated epigenetic processes in plant development and stress response. J Integr Plant Biol 50, 1187–1195.
Chinnusamy V, Gong Z, Zhu JK (2009). Epigenetic regulation of stress responses in plants. Current Opinion in Plant Biology 12, 1–7.
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel J, Kuo F, Kim J, Cokus S, Casero D, Bernal M, Huijser P, Kramer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M (2010). Relationship between nucleosome positioning and DNA methylation. Nature 466:388–392.
Choi Y, Gehring M, Johnson L, Hoannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL (2002) DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110, 33–42.
Chua YL, Watson LA, Gray JC (2003). The transcriptional enhancer of the pea plastocyanine gene associates with the nuclear matrix and regulates gene expression through histone acetylation. Plant Cell 15, 1468–1479.
Clapier CR, Cairns BR (2009). The biology of chromatin remodeling complexes. Annu Rev Biochem 78, 273–304.
Damri M, Granot G, Ben-Meir H, Avivi Y, Plaschkes I, Chalifa-Caspi V, Wolfson M, Fraifeld V, Grafi G (2009). Senescing cells share common features with dedifferentiating cells. Rejuvenation Res 12, 435–443.
Diaz-Sala C, Rey M, Boronat A, Besford R, Rodriguez R (1995). Variations in the DNA methylation and polypeptide patterns of adult hazel (Corylus avellana L.) associated with sequential in vitro subcultures. Plant Cell Rep 15, 218–221.
Drumm A, Nagl W (1982). Loss of DNA and euchromatin in senescing leaf cells of Allium. Mech Ageing Dev 118, 103–110.
Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, Reed JW (2005). AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132, 4563–4574.
Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC (2006). Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biol 16, 939–944.
Finnegan EJ, Kovac KA (2000). Plant DNA methyltransferases. Plant Mol Biol 43, 189–210.
Fraga MF,Canal MJ,Rodriguez R (2002a).Phase change related epigenetie and physiological changes in Pinus radiata D.Don. Planta 2l5, 672-678.
Fraga MF, Rodriguez R, Canal MJ (2002b). Genomic DNA methylation-demethylation during aging and reinvigoration of Pinus radiate. Tree Physiol 22, 813–816.
Gregersen PL, Holm PB, Krupinska K (2008). Leaf senescence and nutrient remobilisation in barley and wheat. Plant Biol 10, 37–49.
Groszmann M, Greaves IK, Albert N, Fujimoto R, Helliwell Ca, Dennis ES, Peacock WJ (2011). Epigentics in plants-vernalisation and hybrid vigour. Biochim Biophys Acta 1809, 427–437.
Guiboileau A, Sormani R, Meyer C, Masclaux-Daubresse C (2010). Senescence and death of plant organs: nutrient recycling and developmental regulation. C R Biol 333, 382–391
Guo Y, Gan S (2005). Leaf senescence: signals, execution, and regulation. Curr Top Dev Biol 71, 83–112.
Guo Y, Gan S (2012). Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence promoting hormonal, pathological and environmental stress treatments. Plant Cell Environ 35, 644–655.
He G, Elling AA, Deng XW (2011). The epigenome and plant development. Annu Rev Plant Biol 62, 411–435.
Hinderhofer K, Zentgraf U (2001). Identification of a transcription factor specifically expressed at the onset of leaf senescence. Planta 213, 469–473.
Huijser P, Schmid M (2011). The control of developmental phase transitions in plants. Development 138, 4117–4129.
Jang IC, Chung PJ, Hemmes H, Jung C, Chua NH (2011). Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. Plant Cell 23, 459–470.
Jenuwein T, Allis CD (2001). Translating the histone code. Science 293, 1074–1080.
Johnson DS, A Mortazavi, RM Myers, Wold B (2007). Genome-wide mapping of in vivo protein-DNA interactions. Science 316, 1497-502.
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W (2010). Transcriptional control of gene expression by MicroRNAs. Cell 140, 111-122.
Khraiwesh B, Zhu JK, Zhu J (2012). Role of miRNAs and siRNAs in biotic and abiotic stress response of plants. Biochim Biophys Acta 1819, 137–148.
Kim JH, Woo HR, Kim J, Lim PO, Lee IC, Choi SH, Hwang D, Nam HG (2009). Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science 323, 1053–1057.
Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda H, Kimura K, Shinozaki K, Seki M (2008). Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol 49, 1580–1588.
Kolodziejek I, Koziol-Lipinska J, Waleza M, Korczynski J, Mostowska A (2007). Aspects of programmed cell death during early senescence of barley leaves: possible role of nitric oxide. Protoplasma 232, 97–108.
Kusch T, Workman JL (2007). Histone variants and complexes involved in their exchange. Subcell Biochem 41, 91–109.
Lauria M, Rossi V (2011). Epigenetic control of gene regulation in plants. Biochim Biophys Acta 1809, 369–378.
Li J, Terzaghi W, Deng XW (2012). Genomic basis for light control of plant development. Protein Cell 3, 106–116.
Li N, Ye M, Li Y, Yan Z, Butcher LM, Sun J, Han X, Chen Q, Zhang X, Wang J (2010). Whole genome DNA methylation analysis based on high throughput sequencing technology. Methods. 52, 203-12.
Lim PO, Kim HJ, Nam HG (2007b). Leaf senescence. Annu Rev Plant Biol 58, 115–136.
Lim PO, Kim Y, Breeze E, Koo JC, Woo HR, Ryu JS, Park DH, Beynon J, Tabrett A, Buchanan-Wollaston V, Nam HG (2007a). Overexpression of a chromatin architecture-controlling AT-hook protein extends leaf longevity and increases the post-harvest storage life of plants. Plant J 52, 1140–1153.
Lim PO, Lee IC, Kim J, Kim HJ, Ryu JS, Woo HR, Nam HG (2010). Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. J Exp Bot 61, 1419–1430.
Luger K, Ma¨der AW, Richmond RK, Sargent DF, Richmond TJ (1997). Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389, 251–260.
Luo M, Liu X, Singh P, Cui Y, Zimmerli L, Wu K (2012). Chromatin modifications and remodeling in plant abiotic stress responses. Biochim Biophys Acta 1819, 129–136.
Morales-Ruiz T, Ortega-Galisteo AP, Ponferrada-Mar?′n MI, Martinez-Mac?′as MI, Ariza RR, Rolda′n-Arjona T (2006). DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases. Proc Natl Acad Sci USA 103, 6853–6858.
Naumann K, Fischer A, Hofmann I, Krauss V, Phalke S, Irmler K, Hause G, Aurich AC, Dorn R, Jenuwein T, Reuter G (2005). Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J 24, 1418–1429.
Oliver SN, Finnegan EJ, Dennis ES, Peacock WJ, Trevaskis B (2009). Vernalization-induced flowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene. Proc Natl Acad Sci 106, 8386–8391.
Pandey R, Muller A, Napoli CA, Selinger DA, Pikaard CS, RichardsEJ (2002). Analysis of histone acetyltransferases and histone deacetylase families of Arabidopsis thaliana suggests functional diviserfication of chromatin modification among multicellular eukaryotes. Nucleic Acids Res 30, 5036–5055.
Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL (2007). DNA demethylation in the Arabidopsis genome. Proc Natl Acad Sci USA 104, 6752–6757.
Pilido A, Laufs P (2010). Co-ordination of developmental processes by small RNAs during leaf development. J Exp Bot 61, 1277–1291.
Prakash A P.Kush A,Lakshmanan P (2003).Cytosine methylation occurs in a CDC48 homnlogue and a MADS-box gene during adventitious shoot induction in Petunia leaf explants. J Exp Bot 54, l361-137l.
Rubio-Somoza I, Weigel D (2011). MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 16, 258–264.
Schommer C, Palatnik JF, Aggarwal P, Che′telat A, Cubas P, Farmer EE, Nath U, Weigel D (2008). Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol 6, 1991–2001.
Servet C, Conde e Silva N, Zhou DX (2010). Histone acetyltransferase AtCGN5/HAG1 is a versatile regulator of the developmental and inducible gene expression in Arabidopsis. Mol Plant 3, 670–677.
Sunkar R, Chinnusamy V, Zhu JH, Zhu JK (2007). Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 12, 301–309.
Thorstensen T, Grini PE, Aalen RB (2011). SET domain proteins in plant development. Biochim Biophys Acta 1809, 407–420.
Tian L, Chen ZJ (2001). Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc Natl Acad Sci USA 98, 200–205.
Tian L, Fong MP, Wang JJ, Wie NE, Jiang H, Doerge RW, Chen ZJ (2005). Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development. Genetics 169, 337–345.
van der Graaff E, Schwacke R, Schneider A, Desimone M, Flu¨gge UI, Kunze R (2006). Transcription analysis of Arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence. Plant Physiol 141, 776–792.
Vanyushin BF, Ashapkin VV (2011). DNA methylation in higher plants: past, present and future. Biochim Biophys Acta 1809, 360–368.
Weigel D, Ahn JH, Bla′zquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferra′ndiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, Harrison MJ, Lamb CJ, Yanofsky MF, Chory J (2000). Activation tagging in Arabidopsis. Plant Physiol 122, 1003–1013.
Wingler A, Roitsch T (2008). Metabolic regulation of leaf senescence: interactions of sugar signalling with biotic and abiotic stress responses. Plant Biol 10, 50–62.
Wu CT, Morris JR (2008). Genes, genetics and epigenetics: a correspondence. Science, 293, 1103-5.
Wu K, Zhang L, Zhou C, Yu CW, Chaikam V (2008). HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis. J Exp Bot 59, 225–234.
Yaish MW, Colasanti J, Rothstein SJ (2011). The role of epigenetic processes in controlling flowering time in plants exposed to stress. J Exp Bot 62, 3727–3735.
Yang H, Han Z, Cao Y, Fan D, Li H, Mo M, Feng Y, Liu L, Wang Z, Yue Y, Cui S, Chen S, Chai J, Ma L (2011). A companion cell–dominant and developmentally regulated H3K4 demethylase controls flowering time in Arabidopsis via the repression of FLC expression. PLoS Genet 8, e1002664.
Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M (2007). Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 5, e129.
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan S, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR (2006). Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126, 1189–1201.
Zhu JK (2009). Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43, 143–66.
Zubko E, Gentry M, Kunova A, Meyer P (2012). De novo DNA methylation activity of METHYLTRANSFERASE1 (MET1) partially restores body methylation in Arabidopsis Thaliana. Plant J 71, 1029–1037.