包劲松 (2007). 稻米淀粉品质遗传与改良研究进展. 分子植物育种 5, 1-20.
郭慧妍, 董雪, 安梦楠, 夏子豪, 吴元华 (2024). 泛素化修饰关键酶在植物抗逆反应中的功能研究进展. 生物技术通报1-11.
庞悦涵, 应逸宁, 徐非非, 包劲松 (2024). 高温胁迫下水稻胚乳磷酸化与泛素化蛋白质组学联合分析. 浙江大学学报(农业与生命科学版)1-13.
周鑫 (2020). 稻米淀粉消化特性等功能性状的遗传与结构基础研究. 博士论文. 杭州: 浙江大学. pp. 1-134.
Ahmed Z, Tetlow IJ, Ahmed R, Morell MK, Emes MJ (2015). Protein-protein interactions among enzymes of starch biosynthesis in high-amylose barley genotypes reveal differential roles of heteromeric enzyme complexes in the synthesis of a and b granules. Plant Sci 233, 95-106.
Akihiro T, Mizuno K, Fujimura T (2005). Gene expression of adp-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and aba. Plant Cell Physiol 46, 937-946.
Balasjin NM, Maki JS, Schlappi MR, Marshall CW (2022). Plant growth-promoting activity of bacteria isolated from asian rice (oryza sativa l.) Depends on rice genotype. MICROBIOL SPECTR 10.
Bao JS, Deng BW, Zhang L (2023). Molecular and genetic bases of rice cooking and eating quality: an updated review. Cereal Chem 100, 1220-1233.
Bao JS, Kong XL, Xie JK, Xu L (2004). Analysis of genotypic and environmental effects on rice starch. 1. Apparent amylose content, pasting viscosity, and gel texture. J Agr Food Chem 52, 6010-6016.
Bao JS, Xu JH (2023). Molecular research for cereal grain quality. Int J Mol Sci 24.
Bi YD, Wang HX, Lu TC, Li XH, Shen ZO, Chen YB, Wang BC (2011). Large-scale analysis of phosphorylated proteins in maize leaf. Planta 233, 383-392.
Bowman CE, Rodriguez S, Alpergin E, Acoba MG, Zhao L, Hartung T, Claypool SM, Watkins PA, Wolfgang MJ (2017). The mammalian malonyl-coa synthetase acsf3 is required for mitochondrial protein malonylation and metabolic efficiency. Cell Chem Biol 24, 673.
Cabrera E, Mathews P, Mezhericher E, Beach TG, Deng J, Neubert TA, Rostagno A, Ghiso J (2018). Aβ truncated species: implications for brain clearance mechanisms and amyloid plaque deposition. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1864, 208-225.
Chen C, He BS, Liu XX, Ma XD, Liu YJ, Yao HY, Zhang P, Yin JL, Wei X, Koh HJ, Yang C, Xue HW, Fang ZW, Qiao YL (2020). Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (pfp1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (oryza sativa l.). Plant Biotechnol J 18, 83-95.
Chen GX, Zhou JW, Liu YL, Lu XB, Han CX, Zhang WY, Xu YH, Yan YM (2016). Biosynthesis and regulation of wheat amylose and amylopectin from proteomic and phosphoproteomic characterization of granule-binding proteins. Sci Rep-Uk 6.
Ding JJ, Karim H, Li YL, Harwood W, Guzman C, Lin N, Xu Q, Zhang YZ, Tang HP, Jiang YF, Qi PF, Deng M, Ma J, Wang JR, Chen GY, Lan XJ, Wei YM, Zheng YL, Jiang QT (2021). Re-examination of the apetala2/ethylene-responsive factor gene family in barley (hordeum vulgare l.) Indicates a role in the regulation of starch synthesis. Front Plant Sci 12.
Feng B, Li SD, Wang ZS, Cao F, Wang Z, Gao CH, Li G, Kong LA (2021). Global analysis of lysine 2-hydroxyisobutyrylation in wheat root. Sci Rep-Uk 11.
Finkemeier I, Laxa M, Miguet L, Howden A, Sweetlove LJ (2011). Proteins of diverse function and subcellular location are lysine acetylated in arabidopsis. Plant Physiol 155, 1779-1790.
Galvan-Pena S, Carroll RG, Newman C, Hinchy EC, Palsson-Mcdermott E, Robinson EK, Covarrubias S, Nadin A, James AM, Haneklaus M, Carpenter S, Kelly VP, Murphy MP, Modis LK, O'Neill LA (2019). Malonylation of gapdh is an inflammatory signal in macrophages. Nat Commun 10.
Gao Q, Yan T, Zhang Z, Liu S, Fang X, Gao D, Yang Y, Xu W, Qiao J, Cao Q, Ding Z, Wang Y, Yu J, Wang X (2020). Casein kinase 1 regulates cytorhabdovirus replication and transcription by phosphorylating a phosphoprotein serine-rich motif. The Plant cell 32, 2878-2897.
Han C, Yang PF, Sakata K, Komatsu S (2014). Quantitative proteomics reveals the role of protein phosphorylation in rice embryos during early stages of germination. J Proteome Res 13, 1766-1782.
He DL, Wang Q, Li M, Damaris RN, Yi XL, Cheng ZY, Yang PF (2016). Global proteome analyses of lysine acetylation and succinylation reveal the widespread involvement of both modification in metabolism in the embryo of germinating rice seed. J Proteome Res 15, 879-890.
He ZQ, Huang TT, Ao K, Yan XF, Huang Y (2017). Sumoylation, phosphorylation, and acetylation fine-tune the turnover of plant immunity components mediated by ubiquitination. Front Plant Sci 8.
Hennen-Bierwagen TA, Lin Q, Grimaud F, Planchot V, Keeling PL, James MG, Myers AM (2009). Proteins from multiple metabolic pathways associate with starch biosynthetic enzymes in high molecular weight complexes: a model for regulation of carbon allocation in maize amyloplasts. Plant Physiol 149, 1541-1559.
Hirschey MD, Zhao YM (2015). Metabolic regulation by lysine malonylation, succinylation, and glutarylation. Mol Cell Proteomics 14, 2308-2315.
Holstein E, Dittmann A, Kaariainen A, Pesola V, Koivunen J, Pihlajaniemi T, Naba A, Izzi V (2021). The burden of post-translational modification (ptm)-disrupting mutations in the tumor matrisome. Cancers 13.
Hu YQ, Zhang YN, Yu SW, Deng GF, Dai GX, Bao JS (2023). Combined effects of beiib and ssiia alleles on amylose contents, starch fine structures and physicochemical properties of indica rice. FOODS 12, 119.
Jin WB, Wu FL (2016). Proteome-wide identification of lysine succinylation in the proteins of tomato (solanum lycopersicum). Plos One 11.
Kosova G, Scott NM, Niederberger C, Prins GS, Ober C (2012). Genome-wide association study identifies candidate genes for male fertility traits in humans. Am J Hum Genet 90, 950-961.
Kulkarni RA, Worth AJ, Zengeya TT, Shrimp JH, Garlick JM, Roberts AM, Montgomery DC, Sourbier C, Gibbs BK, Mesaros C, Tsai YC, Das S, Chan KC, Zhou M, Andresson T, Weissman AM, Linehan WM, Blair IA, Snyder NW, Meier JL (2017). Discovering targets of non-enzymatic acylation by thioester reactivity profiling. Cell Chem Biol 24, 231-242.
Liu DR, Huang WX, Cai XL (2013). Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation. Plant Sci 210, 141-150.
Liu F, Romanova N, Lee EA, Ahmed R, Tetlow IJ (2012). Glucan affinity of starch synthase iia determines binding of starch synthase i and starch-branching enzyme iib to starch granules. Biochem J 448, 373-387.
Liu FS, Ahmed Z, Lee EA, Donner E, Liu Q, Ahmed R, Morell MK, Emes MJ, Tetlow IJ (2012). Allelic variants of the amylose extender mutation of maize demonstrate phenotypic variation in starch structure resulting from modified protein-protein interactions. J Exp Bot 63, 1167-1183.
Liu JB, Wang GY, Lin Q, Liang WX, Gao ZQ, Mu P, Li GQ, Song LM (2018). Systematic analysis of the lysine malonylome in common wheat. Bmc Genomics 19.
Luo M, Cheng K, Xu YC, Yang SG, Wu KQ (2017). Plant responses to abiotic stress regulated by histone deacetylases. Front Plant Sci 8.
Lv DW, Li X, Zhang M, Gu AQ, Zhen SM, Wang C, Li XH, Yan YM (2014). Large-scale phosphoproteome analysis in seedling leaves of brachypodium distachyon l. Bmc Genomics 15, 1-35.
Makhmoudova A, Williams D, Brewer D, Massey S, Patterson J, Silva A, Vassall KA, Liu FS, Subedi S, Harauz G, Siu K, Tetlow IJ, Emes MJ (2014). Identification of multiple phosphorylation sites on maize endosperm starch branching enzyme iib, a key enzyme in amylopectin biosynthesis. J Biol Chem 289, 9233-9246.
Mehrpouyan S, Menon U, Tetlow IJ, Emes MJ (2021). Protein phosphorylation regulates maize endosperm starch synthase iia activity and protein-protein interactions. Plant J 105, 1098-1112.
Meng XX, Lv YD, Mujahid H, Edelmann MJ, Zhao H, Peng XJ, Peng ZH (2018). Proteome-wide lysine acetylation identification in developing rice (oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation. Bba-Proteins Proteom 1866, 451-463.
Meng XX, Mujahid H, Zhang YD, Peng XJ, Redo?a ED, Wang CL, Peng ZH (2019). Comprehensive analysis of the lysine succinylome and protein co-modifications in developing rice seeds. Mol Cell Proteomics 18, 2359-2372.
Meng XX, Xing SH, Perez LM, Peng XJ, Zhao QY, Redoa ED, Wang CL, Peng ZH (2017). Proteome-wide analysis of lysine 2-hydroxyisobutyrylation in developing rice (oryza sativa) seeds. Sci Rep-Uk 7.
Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX (2019). The scope, functions, and dynamics of posttranslational protein modifications. Annu Rev Plant Biol 70, 119-151.
Mujahid HN, Meng XX, Xing SH, Peng XJ, Wang CL, Peng ZH (2018). Malonylome analysis in developing rice (oryza saliva) seeds suggesting that protein lysine malonylation is well-conserved and overlaps with acetylation and succinylation substantially. J Proteomics 170, 88-98.
Nie LT, Shuai L, Zhu MR, Liu P, Xie ZF, Jiang SW, Jiang HW, Li J, Zhao YM, Li JY, Tan MJ (2017). The landscape of histone modifications in a high-fat diet-induced obese (dio) mouse model. Mol Cell Proteomics 16, 1324-1334.
Ohdan T, Francisco PB, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y (2005). Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J Exp Bot 56, 3229-3244.
Pan YH, Chen L, Zhu XY, Li JC, Rashid M, Chen C, Qing DJ, Zhou WY, Yang XH, Gao LJ, Zhao Y, Deng GF (2023). Utilization of natural alleles for heat adaptability QTLs at the flowering stage in rice. Bmc Plant Biol 23, 256.
Pang YH, Hu YQ, Bao JS (2021). Comparative phosphoproteomic analysis reveals the response of starch metabolism to high-temperature stress in rice endosperm. Int J Mol Sci 22.
Pang YH, Zhou X, Chen YL, Bao JS (2018). Comparative phosphoproteomic analysis of the developing seeds in two indica rice (oryza sativa l.) Cultivars with different starch quality. J Agr Food Chem 66, 3030-3037.
Qiu JH, Hou YX, Tong XH, Wang YF, Lin HY, Liu Q, Zhang W, Li ZY, Nallamilli BR, Zhang J (2016). Quantitative phosphoproteomic analysis of early seed development in rice (oryza sativa l.). Plant Mol Biol 90, 249-265.
Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA (2014). Initial description of the developing soybean seed protein lys-nε -acetylome. J Proteomics 96, 56-66.
Svensson K, Labarge SA, Sathe A, Martins VF, Tahvilian S, Cunliffe JM, Sasik R, Mahata SK, Meyer GA, Philp A, David LL, Ward SR, Mccurdy CE, Aslan JE, Schenk S (2020). P300 and camp response element-binding protein-binding protein in skeletal muscle homeostasis, contractile function, and survival. J Cachexia Sarcopeni 11, 464-477.
Tan MJ, Peng C, Anderson KA, Chhoy P, Xie ZY, Dai LZ, Park J, Chen Y, Huang H, Zhang Y, Ro J, Wagner GR, Green MF, Madsen AS, Schmiesing J, Peterson BS, Xu GF, Ilkayeva OR, Muehlbauer MJ, Braulke T, Muhlhausen C, Backos DS, Olsen CA, Mcguire PJ, Pletcher SD, Lombard DB, Hirschey MD, Zhao YM (2014). Lysine glutarylation is a protein posttranslational modification regulated by sirt5. Cell Metab 19, 605-617.
Teng B, Zeng RZ, Wang YC, Liu ZQ, Zhang ZM, Zhu HT, Ding XH, Li WT, Zhang GQ (2012). Detection of allelic variation at the wx locus with single-segment substitution lines in rice (oryza sativa l.). Mol Breeding 30, 583-595.
Tetlow IJ, Beisel KG, Cameron S, Makhmoudova A, Liu F (2008). Analysis of protein complexes in wheat amyloplasts reveals functional interactions among starch biosynthetic enzymes. Plant Physiol 146, 1878-1891.
Tetlow IJ, Wait R, Lu ZX, Rut A, G BC, Sergio E, Behjat K, K MM, J EM (2004). Protein phosphorylation in amyloplasts regulates starch branching enzyme activity and protein-protein interactions. The Plant cell 16, 694-708.
Walley JW, Shen ZX, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP (2013). Reconstruction of protein networks from an atlas of maize seed proteotypes. P Natl Acad Sci Usa 110, E4808-E4817.
Wang YF, Hou YX, Qiu JH, Li ZY, Zhao J, Tong XH, Zhang J (2017). A quantitative acetylomic analysis of early seed development in rice (oryza sativa l.). Int J Mol Sci 18.
Wang ZP, Colel PA (2020). The chemical biology of reversible lysine post-translational modifications. Cell Chem Biol 27, 953-969.
Wu LP, Meng XX, Huang HZ, Liu YY, Jiang WM, Su XL, Wang ZJ, Meng F, Wang LH, Peng DY, Xing SH (2022). Comparative proteome and phosphoproteome analyses reveal different molecular mechanism between stone planting under the forest and greenhouse planting of dendrobium huoshanense. Front Plant Sci 13.
Wu X, Oh MH, Schwarz EM, Larue CT, Sivaguru M, Imai BS, Yau PM, Ort DR, Huber SC (2011). Lysine acetylation is a widespread protein modification for diverse proteins in arabidopsis. Plant Physiol 155, 1769-1778.
Xie SP, Liu HL, Ma TZ, Shen S, Zheng HL, Yang LM, Liu LC, Wei ZH, Xin W, Zou DT, Wang JG (2023). Global phosphoproteomic analysis reveals the defense and response mechanisms of japonica rice under low nitrogen stress. Int J Mol Sci 24.
Xie X, Kang HX, Liu WD, Wang GL (2015). Comprehensive profiling of the rice ubiquitome reveals the significance of lysine ubiquitination in young leaves. J Proteome Res 14, 2017-2025.
Xie ZY, Dai JB, Dai LZ, Tan MJ, Cheng ZY, Wu YM, Boeke JD, Zhao YM (2012). Lysine succinylation and lysine malonylation in histones. Mol Cell Proteomics 11, 100-107.
Xing SH, Meng XX, Zhou LH, Mujahid H, Zhao CF, Zhang YD, Wang CL, Peng ZH (2016). Proteome profile of starch granules purified from rice (oryza sativa) endosperm. Plos One 11.
Xiong YH, Peng XJ, Cheng ZY, Liu WD, Wang GL (2016). A comprehensive catalog of the lysine-acetylation targets in rice (oryza sativa) based on proteomic analyses. J Proteomics 138, 20-29.
Xu M, Tian XM, Ku TT, Wang GY, Zhang EY (2021). Global identification and systematic analysis of lysine malonylation in maize (zea mays l.). Front Plant Sci 12.
Xu Y, Li XX, Liang WX, Liu MJ (2020). Proteome-wide analysis of lysine 2-hydroxyisobutyrylation in the phytopathogenic fungus botrytis cinerea. Front Microbiol 11.
Xue C, Liu S, Chen C, Zhu J, Yang XB, Zhou Y, Guo R, Liu XY, Gong ZY (2018). Global proteome analysis links lysine acetylation to diverse functions in oryza sativa. Proteomics 18.
Xue C, Qiao ZY, Chen X, Cao PH, Liu K, Liu S, Ye L, Gong ZY (2020). Proteome-wide analyses reveal the diverse functions of lysine 2-hydroxyisobutyrylation inoryza sativa. Rice 13.
Xue H, Zhang QF, Wang PQ, Cao B, Jia C, Cheng B, Shi Y, Guo W, Wang Z, Liu Z, Cheng H (2022). Qptmplants: an integrative database of quantitative post-translational modifications in plants. Nucleic Acids Res 50, D1491-D1499.
Yang WQ, Zhang W, Wang XX (2017). Post-translational control of aba signalling: the roles of protein phosphorylation and ubiquitination. Plant Biotechnol J 15, 4-14.
Yasunori N (2002). Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: rice endosperm as a model tissue. PLANT CELL PHYSIOL 43, 718-725.
Yin XJ, Wang X, Komatsu S (2018). Phosphoproteomics: protein phosphorylation in regulation of seed germination and plant growth. Curr Protein Pept Sc 19, 401-412.
Ying YN, Hu YQ, Zhang YN, Tappiban P, Zhang ZW, Dai GX, Deng GF, Bao JS, Xu FF (2023). Identification of a new allele of soluble starch synthase iiia involved in the elongation of amylopectin long chains in a chalky rice mutant. Plant Sci 328.
Ying YN, Pang YH, Bao JS (2023). Comparative ubiquitome analysis reveals diverse functions of ubiquitination in rice seed development under high-temperature stress. Seed Biol 2.
Ying YN, Xu FF, Zhang ZW, Tappiban P, Bao JS (2022). Dynamic change in starch biosynthetic enzymes complexes during grain-filling stages in beiib active and deficient rice. Int J Mol Sci 23.
Yu GW, Gaoyang YZ, Liu L, Shoaib N, Deng YW, Zhang N, Li YP, Huang YB (2022). The structure, function, and regulation of starch synthesis enzymes ssiii with emphasis on maize. Agronomy-Basel 12.
Yu GW, Lv YA, Shen LY, Wang YB, Qing Y, Wu N, Li YP, Huang HH, Zhang N, Liu YH, Hu YF, Liu HM, Zhang JJ, Huang YB (2019). The proteomic analysis of maize endosperm protein enriched by phos-tag(tm) reveals the phosphorylation of brittle-2 subunit of adp-glc pyrophosphorylase in starch biosynthesis process. Int J Mol Sci 20.
Yu HT, Wang T (2016). Proteomic dissection of endosperm starch granule associated proteins reveals a network coordinating starch biosynthesis and amino acid metabolism and glycolysis in rice endosperms. Front Plant Sci 7.
Zhang CQ, Zhu JH, Chen SJ, Fan XL, Li QF, Lu Y, Wang M, Yu HX, Yi CD, Tang SZ, Gu MH, Liu QQ (2019). Wx(lv), the ancestral allele of rice waxy gene. Mol Plant 12, 1157-1166.
Zhang K, Xiong YH, Sun WX, Wang GL, Liu WD (2019). Global proteomic analysis reveals widespread lysine succinylation in rice seedlings. Int J Mol Sci 20.
Zhang M, Lv DW, Ge P, Bian YW, Chen GX, Zhu GR, Li XH, Yan YM (2014). Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (triticum aestivum l.). J Proteomics 109, 290-308.
Zhang M, Ma CY, Lv DW, Zhen SM, Li XH, Yan YM (2014). Comparative phosphoproteome analysis of the developing grains in bread wheat (triticum aestivum l.) Under well-watered and water-deficit conditions. J Proteome Res 13, 4281-4297.
Zhang N, Zhang LR, Li LJ, Geng JY, Zhao L, Ren Y, Dong ZD, Chen F (2022). Global profiling of 2-hydroxyisobutyrylome in common wheat. Genom Proteom Bioinf 20, 688-701.
Zhang YM, Song LM, Liang WX, Mu P, Wang S, Lin Q (2016). Comprehensive profiling of lysine acetylproteome analysis reveals diverse functions of lysine acetylation in common wheat. Sci Rep-Uk 6.
Zhang YM, Wang GY, Song LM, Mu P, Wang S, Liang WX, Lin Q (2017). Global analysis of protein lysine succinylation profiles in common wheat. Bmc Genomics 18.
Zhang Z, Zhao H, Tang J, Li Z, Li Z, Chen D, Lin W (2014). A proteomic study on molecular mechanism of poor grain-filling of rice (oryza sativa l.) Inferior spikelets. Plos One 9, e89140.
Zhang ZH, Tan MJ, Xie ZY, Dai LZ, Chen Y, Zhao YM (2011). Identification of lysine succinylation as a new post-translational modification. Nat Chem Biol 7, 58-63.
Zhang ZW, Ying YN, Zhang L, Dai G, Deng G, Bao J, Xu F (2023). Starch structural reasons for the effects of ssiiia deficiency on the textural and digestive properties of cooked rice. J Cereal Sci 111, 103671.
Zhen SM, Deng X, Zhang M, Zhu G, Lv D, Wang Y, Zhu D, Yan Y (2017). Comparative phosphoproteomic analysis under high-nitrogen fertilizer reveals central phosphoproteins promoting wheat grain starch and protein synthesis. Front Plant Sci 8, 67.
Zhu LY, Cheng H, Peng GQ, Wang SS, Zhang ZG, Ni ED, Fu XD, Zhuang CX, Liu ZX, Zhou H (2020). Ubiquitinome profiling reveals the landscape of ubiquitination regulation in rice young panicles. Genom Proteom Bioinf 18, 305-320.
Home