Chinese Bulletin of Botany ›› 2008, Vol. 25 ›› Issue (06): 695-700.

• 实验简报 • Previous Articles     Next Articles

Cloning and Bioinformatics Analysis of TIR1 cDNA from Super Hybrid Rice Parental Line 1S

Zhigang Huang, Huang Hu, Xuanzhi Zhao, Ruozhong Wang, Langtao Xiao *   

  1. Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University,Changsha 410128, China
  • Received:2008-04-21 Revised:2008-06-25 Online:2008-11-01 Published:2010-10-18
  • Contact: Langtao Xiao

Abstract: The auxin receptor TIR1, which can directly bind to auxin through the formation of the SCFTIR1 complex , is the key protein in the Aux /IAA degradation pathway of the 26S proteasome. In this research, we designed a specific primer according to the results of a BLAST search of bioinformatics data; the super hybrid rice parental line 1S was used as the plant material. After RT-PCR and T-A cloning, a 2 219 bp cDNA sequence was obtained through sequencing. Its open reading frame (ORF) was 1 764 bp long and coded for a polypeptide of 587 amino acids. Bioinformatics analysis revealed that the polypeptide shares 77% similarity with AtTIR1. Both polypeptides contain an F-box motif and a leucine-rich repeat domain but no transmembrane helices or signal peptide. The cDNA sequence was designated as OsTIR1 and submitted to GenBank.