基于转录组数据揭示4种兜兰的全基因组复制历史

王蒙, 王婷, 夏增强, 李廷章, 金效华, 严岳鸿, 陈建兵

Revealing the New Whole-genome Duplication Event of Four Paphiopedilum Species Based on Transcriptome Data

Meng Wang, Ting Wang, Zengqiang Xia, Tingzhang Li, Xiaohua Jin, Yuehong Yan, Jianbing Chen

表3 基于高斯混合模型拟合的Ks结果

Table 3 The Ks value based on Gaussian mixture modeling

Species No. of components No. of duplicates BIC Variance Mean (Ks) Proportion Paphiopedilum concolor 9 207 -4673.731 0.0000 0.1077 0.0527 9 385 -4673.731 0.0002 0.1314 0.1048 9 416 -4673.731 0.0007 0.1740 0.1194 9 311 -4673.731 0.0026 0.2517 0.0964 9 522 -4673.731 0.0175 0.5161 0.1544 9 642 -4673.731 0.0241 0.8236 0.1741 9 567 -4673.731 0.1557 1.5043 0.1594 9 300 -4673.731 0.5765 2.4529 0.1148 9 90 -4673.731 0.1277 4.3036 0.0240 P. hirsutissimum 7 196 -4604.688 0.0001 0.1146 0.0632 7 277 -4604.688 0.0005 0.1504 0.0991 7 290 -4604.688 0.0026 0.2292 0.1109 7 558 -4604.688 0.0282 0.5407 0.2162 7 508 -4604.688 0.0260 0.8544 0.1693 7 585 -4604.688 0.2594 1.5894 0.2351 7 236 -4604.688 0.8550 3.0527 0.1062 Species No. of components No. of duplicates BIC Variance Mean (Ks) Proportion P. malipoense 9 377 -14027.68 0.0000 0.1081 0.0399 9 751 -14027.68 0.0003 0.1362 0.0890 9 820 -14027.68 0.0016 0.2006 0.1005 9 579 -14027.68 0.0067 0.3290 0.0768 9 1611 -14027.68 0.0287 0.6196 0.1983 9 1464 -14027.68 0.0447 1.0026 0.1778 9 1634 -14027.68 0.1002 1.6186 0.1952 9 683 -14027.68 0.5901 2.6205 0.1105 9 105 -14027.68 0.0568 4.5773 0.0121 P. armeniacum 9 206 -8261.607 0.0000 0.1063 0.0359 9 472 -8261.607 0.0002 0.1296 0.0870 9 478 -8261.607 0.0008 0.1744 0.0950 9 400 -8261.607 0.0039 0.2729 0.0849 9 1089 -8261.607 0.0213 0.5664 0.2105 9 778 -8261.607 0.0287 0.8825 0.1457 9 999 -8261.607 0.1443 1.4888 0.1980 9 455 -8261.607 0.5375 2.4393 0.1195 9 120 -8261.607 0.1481 4.3256 0.0234