基于转录组的阿拉善地区多枝柽柳多态Genic-SSRs的识别与开发
|
张雅楠, 黄蕾, 李佳彬, 张雷, 党振华
|
Identification and Development of Polymorphic Genic-SSRs in Tamarix ramosissima in Alxa Region Based on Transcriptome
|
Yanan Zhang, Lei Huang, Jiabin Li, Lei Zhang, Zhenhua Dang
|
|
表3 14个多态Genic-SSRs标记的基本信息及遗传学参数
|
Table 3 Basic information and genetic parameters of the 14 polymorphic Genic-SSRs
|
|
SSR ID | PS (5′→3′) | RM | Tm (°C) | AS (bp) | Na | PIC | Ho | He | 104 | F: CAAGGAGGAGCTGTCGTCTG | AG | 59.9 | 123-139 | 8 | 0.516 | 0.286 | 0.558 | | R: GCAGACACGAAGTTTGCGAT | | 221 | F: TGAAGCAGCTGTGTTGGTGA | AT | 53.4 | 158-162 | 3 | 0.562 | 0.321 | 0.645 | | R: TCCTCCTCGATTCCCTACTGA | | 300 | F: GAAGGGTTTGGGTGTTTTCAGA | AT | 59.5 | 155-161 | 4 | 0.641 | 0.643 | 0.708 | | R: AAAACGCACCCTCTCAGCAG | | 392 | F: CGCAACAAGCACAACATCCA | CAG | 57.9 | 100-109 | 4 | 0.407 | 0.608 | 0.489 | | R: GTTAACCGGTCGCACAACTG | | 438 | F: GGCACCGATACACAAGGACA | CCTT | 55.4 | 192-204 | 4 | 0.512 | 0.500 | 0.593 | | R: CCCACAGGCTTACACCCATT | | 441 | F: GCCACCGCCACATTTATCTT | CGAG | 50.8 | 106-122 | 5 | 0.520 | 0.286 | 0.570 | | R: GGAGCTTGACAGGTACAGCA | | 563 | F: TCCTGTGCAACGAACTGAGT | GA | 51.7 | 176-186 | 6 | 0.593 | 0.536 | 0.666 | | R: GGGTTTAGCCATGGGTGACA | | 668 | F: ATGGCGATGATGGAGCAACA | GAG | 59.9 | 146-173 | 7 | 0.711 | 0.429 | 0.758 | | R: AGGGATTGGCGGAAGTGAAG | | 670 | F: GAAGACACAGCACCAAGGGA | GAG | 56.7 | 186-201 | 5 | 0.546 | 0.714 | 0.627 | | R: CGTCTTCCCCAAGTCCGATC | | 947 | F: TCCCCACACGTAATCCCTTC | TC | 50.8 | 139-149 | 5 | 0.445 | 0.607 | 0.488 | | R: GCGGATGGAAGGAGAAGAGG | | 1024 | F: TGCGCATTTCTTGATTGCCA | TCT | 52.1 | 168-180 | 5 | 0.476 | 0.464 | 0.516 | | R: GGGTTGATGCGGCTTGATTG | | 1053 | F: GTCGACACTGCAAGCATCAC | TG | 56.7 | 202-204 | 2 | 0.293 | 0.036 | 0.363 | | R: GCACGTACGAGCACATCTCT | | 1093 | F: GAATAGTGGTGGCGGGAGTC | TGC | 54.7 | 117-126 | 2 | 0.195 | 0.250 | 0.223 | | R: GCTTGGCATCGTACCCCTAT | | 1114 | F: GGTCCTCAGTGTGGCCATAG | TGG | 54.1 | 156-171 | 4 | 0.487 | 0.214 | 0.543 | | R: GTGTTAGAGATGGCGGGCAA | | Mean | | | | | 4.5 | 0.493 | 0.421 | 0.553 |
|
|
|